SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene4136

Length: 1800 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene4136

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24085	67/69
SustainPine v2.0	sp_v2.0_unigene82032	2/69

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit n=15 Tax=Embryophyta RepID=PP2A3_ARATH	-	-	95%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	pp2ac-2 - phosphatase 2a isoform 2 belonging to family 2	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	nucleolus	GO:0005730	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVN6

Fln msg:

Fln protein: MSAEPVSSSSGYGQLDAQIEQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKCPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIDTLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASILEVDDTKGHTFIQFEPAPRRGEPDVTRRTPDYFL*

Protein Length: 316

Fln nts: AATGTTATTTTTGTTCGATAGAAAGCTGCAGCAGCAGCAGTGCGGACCAACGGACAGCAACCACAAGGTCGAGGGTTCAATTCTCAGGAAGTGGCCGAAAGACACAGGGACGGCGGGGCGAGAAGGGGAGAGAGAGAAAGGAGAGCATTTCGACACCGAACAAG_-_ATGAGCGCGGAGCCGGTCTCGTCGTCCAGCGGTTATGGCCAACTCGATGCCCAGATTGAACAGCTTATGCAGTGCAAGCCCCTCTCAGAACAGGAGGTCAGAGGATTGTGTGAAAAGGCCAAGGAGATTCTCATGGAAGAAAGTAATGTGCAGCCTGTCAAGTGCCCTGTTACAATCTGTGGTGACATACATGGTCAATTTCACGATCTTGCAGAGCTGTTCCGGATTGGTGGAAAGTGTCCAGATACGAATTATTTGTTCATGGGTGACTATGTTGACCGAGGATACTATTCAGTCGAGACTGTCACTCTTCTAGTGTCATTGAAGGTGCGATATCCCCAACGAATTACCATTCTTCGAGGAAATCATGAGAGTCGTCAGATTACTCAAGTATATGGATTCTATGATGAATGTTTACGGAAGTATGGAAATGCAAACGTCTGGAAGATATTTACAGACCTTTTTGACTACTTCCCATTGACAGCACTGGTAGAATCAGAAATTTTCTGCTTACATGGTGGTTTGTCACCTTCCATTGACACATTAGATAACATAAGGAATTTTGACCGTGTTCAAGAAGTGCCTCATGAAGGTCCCATGTGCGATCTTTTGTGGTCAGATCCAGATGATAGATGTGGATGGGGAATCTCTCCACGTGGTGCAGGGTATACATTTGGACAGGATATATCTGAACAATTTAATCATACAAACAACTTGAAACTTATTGCTAGAGCTCATCAACTTGTCATGGAAGGCTTCAACTGGGGGCATGAGCAAAAGGTTGTCACGATATTTAGTGCACCGAACTACTGCTATCGGTGTGGTAATATGGCATCTATTTTGGAAGTTGATGATACTAAAGGACATACTTTTATTCAGTTTGAGCCAGCGCCAAGGCGAGGAGAACCAGATGTGACACGGAGGACACCAGACTATTTTTTATGA___TTTGTTCTATTGTATGTCTGCTGCTTGCTGTTTTTCTGCCATCAAGCCTCCGTCTGCTATTTGATCTTTGGAGCTGCCACTTTATGATCATACGCATACTGTTGATGCAAAAGCTTTTCAGAGTTTCAAATTGATACACTACATTCAAATTATGCTTCAGGGTGGATGGGGGAAGCATGTATTATGATCAGGTATTACCTGCAAAGGTCTGTGTTTTGTTAGTTTGGAACACTTTCTGTAGGCGGTGCAAGTGCACTGTGTATCCATTTAAGATGCTGCTTTAATGTAGGGAGAGGCAATTTATTTGCCAAGTGTTTATTTAATCTTTAACGTTGTAAACACTTATATTTGGGCATTGTCTGCTGATTGAGTAGTCTGCCCATTTCAATCTCATTAGCTGGTAGTTTGGGACAATTGCTGTTACCAACGCTCATGAGAAATTGCATTTTATTGTGCCTTTAACCTATCCATGGATTGGAGAATCCCTACTTCACAAATCCTGATTCTCACGGAATATTTCAGGAAAGCAGGTTTTCTGTATTTAATTTTAGCAGATATTATCCATTTGCAAGCACATCGTAGGGTCAAGGATCGTTGGTAAATGCAAAAGGGCACTATTTTTTTGTGGCTGTGATATTATTTAACTCGAAGTTTGTAATTTTAAAGTGAAATTATCAGTGTTTTCTACATT

Fln Alignment:

Contig4136___MSAEPVSSSSGYGQLDAQIEQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKCPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIDTLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASILEVDDTKGHTFIQFEPAPRRGEPDVTRRTPD
A9NVN6_________________MSGEPVSSSSGYGQLDAQIEQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKCPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIDTLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASILEVDDTKGHTFIQFEPAPRRGEPDVTRRTPD

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1381	14		85		0.993533
1405	16		83		0.994512
1410	16			83	0.994512
1411		20		80	0.995493
1457	25			75	0.996473
1458	25			75	0.996473
1461			75	25	0.996473
1488	20	80			0.995493
1489	20	80			0.995493
1490		80		20	0.995493
1491	80		20		0.995493
1526	20		80		0.995493
1529	20		80		0.995493
1629	25	75			0.996473
1633			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
28	40	GCA GCA GCA GCA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain