SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3980

Length: 490 nt

UniGene Fasta

>biog3_v1.0_unigene3980
AATGTAGACTCATCTCGAGGGCCAATCTTGAATGCATTGGAGGTAAATAAGTATGTACAGATAAACTATGGCACAGAAGATGCGGAAGTTCTCGCTAGCTTGACTACCCTATATCCTTTATCTGTTTGGGCACTTGAAGGTGGTGATCCTTGTTTACCAGTTCCTTGGACGTGGGTGCAGTGTAGTTTGGATGCACGACCAAGGGTTACTGCAATCCTTTTGTCAGGAAAAAATTTGACAGGGCAGATACCTTTACAAATATTAAATTTGACAGCGCTGGCTGATTTGTGGCTTGATCACAACTTTCTAAATGGTTCATTACCTGATTTTGGTGTTTTAGTTGACTTAAAGAGATTGCACCTTGAATATAACCAATTGAGTGGTACCTTACCTGTGTCTTTGGCAGATTTGCCAAACCTAAAGAACTGTATGTGCAGAATAACCTGTTATCTGGAACTGTGGCTCATCAATTACTGGATAAAGATCTGAT

Ace file of the UniGene biog3_v1.0_unigene3980

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10556	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor protein kinase [Arabidopsis thaliana] gb\|ACN59306.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEC09344.1\| putative receptor protein kinase [Arabidopsis thaliana]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	receptor protein kinase	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW70

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 79 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 163 - 207

Fln protein: NVDSSRGPILNALEVNKYVQINYGTEDAEVLASLTTLYPLSVWALEGGDPCLPVPWTWVQCSLDARPRVTAILLSGKNLTGQIPLQILNLTALADLWLDHNFLNGSLPDFGVLVDLKRLHLEYNQLSGTLPVSLADLPNLKNCMCRITCYLELWLINYWIKI*

Protein Length: 164

Fln nts: A_-_ATGTAGACTCATCTCGAGGGCCAATCTTGAATGCATTGGAGGTAAATAAGTATGTACAGATAAACTATGGCACAGAAGATGCGGAAGTTCTCGCTAGCTTGACTACCCTATATCCTTTATCTGTTTGGGCACTTGAAGGTGGTGATCCTTGTTTACCAGTTCCTTGGACGTGGGTGCAGTGTAGTTTGGATGCACGACCAAGGGTTACTGCAATCCTTTTGTCAGGAAAAAATTTGACAGGGCAGATACCTTTACAAATATTAAATTTGACAGCGCTGGCTGATTTGTGGCTTGATCACAACTTTCTAAATGGTTCATTACCTGATTTTGGTGTTTTAGTTGACTTAAAGAGATTGCACCTTGAATATAACCAATTGAGTGGTACCTTACCTGTGTCTTTGGCAGATTTGCCAAACCTAAAGAACTGTATGTGCAGAATAACCTGTTATCTGGAACTGTGGCTCATCAATTACTGGATAAAGATCTGAT

Fln Alignment:

Contig3980___LTTLYPLSVWALEGGDPCLPVPWTWVQC-SLDARPRVTAILLSGKNLTGQIPLQILNLTALADLWLDHNFLNGSLPDFGVLVDLKRLHLEYNQLSGTLPVSLADLPNLK
A9NW70_________________MKTRFNMKKWI---SDPCYLIPWEGIGCDNRSSEVRISEINLSGRNLTIPVPEEIGQLTALVNLSLENNHLMGPLPNFSSLTMLERLYLQNNSLNGSVPDWLSGLKNLK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
51	33		66		0.997452
53	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain