SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3912

Length: 470 nt

UniGene Fasta

>biog3_v1.0_unigene3912
CGGGACATTAAAAGCTACACAATGTGGGCGAGTTGATTTAAAAAGTGCTCTATATGACACTATTCTACTGAACAGAGTGCCGTCATGGATTGAGAAAGACTGCTCGGAGATAGGTCCACCATTATATCCACCTTTTATGGGTTCTGAGCGTTTCAGGACACCTCTTCACAAAATTTTGCCTCAGGTTCAACTGGAAGCTGTTCTGTGGGGAATTGGAACTGCCCTTGGGGAGCTTCCTCCATATTTTCTCTCCAGAGCAGCTTGCTTATCTGGCAAGAAATTAGAAGACCTGGAGCAGTTGAATGCCCTTGCTGATGAAAGTGGAACCATGTCTGTTTTGATGATGCGGCTCAAGTGTTGGTTTTACTCTAAGTCTCGGCATCTTAATTTCTTTACTATACTGATCCTTGCATCGGTACCCAATCCATTGTTTGACCTTGCAGGCATCATGTGTGGTCAGTTGTCATTTC

Ace file of the UniGene biog3_v1.0_unigene3912

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11707	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuole membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RSQ1_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	snare associated golgi protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU2

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 156 - 449

Fln protein: GTLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNALADESGTMSVLMMRLKCWFYSKSRHLNFFTILILASVPNPLFDLAGIMCGQLSF

Protein Length: 157

Fln nts: CGGGACATTAAAAGCTACACAATGTGGGCGAGTTGATTTAAAAAGTGCTCTATATGACACTATTCTACTGAACAGAGTGCCGTCATGGATTGAGAAAGACTGCTCGGAGATAGGTCCACCATTATATCCACCTTTTATGGGTTCTGAGCGTTTCAGGACACCTCTTCACAAAATTTTGCCTCAGGTTCAACTGGAAGCTGTTCTGTGGGGAATTGGAACTGCCCTTGGGGAGCTTCCTCCATATTTTCTCTCCAGAGCAGCTTGCTTATCTGGCAAGAAATTAGAAGACCTGGAGCAGTTGAATGCCCTTGCTGATGAAAGTGGAACCATGTCTGTTTTGATGATGCGGCTCAAGTGTTGGTTTTACTCTAAGTCTCGGCATCTTAATTTCTTTACTATACTGATCCTTGCATCGGTACCCAATCCATTGTTTGACCTTGCAGGCATCATGTGTGGTCAGTTGTCATTTC

Fln Alignment:

Contig3912___TLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNA-LADESGTMSVLMMRLKCWFYSKSRHLNFFTILILASVPNPLFDLAGIMCGQLS
B8LRU2_________________TLRATQCGRVDLKSAPYDTIQLNRAPSWIDKSCSDFGSPLFPQLIDSERFRTPLLSILPQVQLEAILWGIGTAIGELPPYFVSRAARLSGRRPEALEELDASFVEGSGFLSVWLMRLKRWTFSQSQHLNFFTILVLASVPNPLFDLAGIMCGQLS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
288	66			33	0.997452
400	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain