SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3899

Length: 2330 nt

UniGene Fasta

>biog3_v1.0_unigene3899
AATGTAGAATCTCCTGCCCTCCAGGTCTTCTCCCAATTTCAAATTTGTGAAGGGAGATATTGGGAGTGCAGATCTGGTAAATTATCTGCTGATCACAGAACAGATTGATACTATAATGCATTTTGCGGCACAAACCCATGTGGACAATTCATTTGGGAACAGCTTTGAGTTCACCAAGAACAACATCTATGGTACTCATGTCCTTCTTGAAGCATGCAAGGTGACTGGATTGATCAGAAGATTCATTCATGTGAGCACTGATGAAGTTTATGGTGAAACAGAGAAGGATGCCATTGAGGGAAATCATGAGGCCAGTCAGCTTTTACCCACTAATCCTTATTCTGCAACCAAGGCAGGAGCAGAGATGCTGGTCATGGCTTATGGGAGATCCTACGATTTGCCTGTGATCACCACAAGAGGTAACAATGTATATGGACCTAATCAGTTTCCTGAAAAACTGATACCCAAGTTCATTCTTCTGGCGATGCAAGGGAAGCCACTCCCAATCCATGGCGACGGATCCAATGTTAGGAGCTATTTGTACTGCGAGGACGTTGCTGAGGCTTTTGAAGTCGTTTTGCATAAAGGTGAAGTGGGGCATGTGTATAATATTGGTACACAAAAGGAGAGAAGGGTCATTGATGTGGCCAAGGATATCTGTAGGCTCTTTTCATTAGATGCAGAGAAGGTTATAAAGTTTGTAGACAACAGGCCTTTCAATGATCAGAGATATTATCTGGATGATAAGAAACTCAAGGATCTGGGATGGTCTGAGAGGACTAAATGGGAAGAGGGCTTGAAGAAAACAATGGATTGGTACATTAGACAACCTGATTGGTGGGGTGATGTGTCCGGTGCTCTGCTACCTCATCCAAGGATGCTCACAATGGCAGGAGTTGAGAGGTATACAGAAGCCCATGATGTGGTTGACACAACATCTCCCTCGCCAGAGAATGGCATCGAGCAGAATCACATGCTAGAGCGCTCCAACGGCCTTATTCCAAAGTCAACCTTGAAGTTCTTGATCTATGGGCGCAATGGCTGGATCGGAGGGCTTCTTGGGCAGATATGCCAAAAGCAGGGAATTACATATGAATATGGAAATGGGAGATTAGAGAATAGGTCTCAGATCCTAATGGACATACAGAACATCAAGCCTACTCATGTGTTTAATGCTGCAGGTGTGACAGGTCGGCCTAACGTGGATTGGTGTGAATCCCACAAGCCCGAGACTATTACAACCAATGTGGCGGGAACACTGAATTTGGCTGATATTTGCAAGGAGCAGGGTCTTTTGCTTGTAAATTTTGCAACTGGCTGTATTTTTGAATATGACGATGCTCATCTTGAAGGCAGTGGTATTGGATTTAAGGAGGAAGACAAACCCAACTTCATTGGGTCCTTTTATTCGAAGACCAAGGCCATGGTTGAAGATCTCCTACAAAATTTTGAAAATGTCTGTACTCTTAGGGTGAGAATGCCCATCTCCTCGGACCTGAGTAACCCTCGCAATTTCATCACAAAGATCACTCGATATGAGAAAGTGGTAAATATACCAAACAGTATGACAGTCCTTGATGAGTTGCTGCCAATCTCGATTGAGATGGCAAAAAGAAATTGCACTGGCATATGGAACTTCACTAACCCAGGTGTTGTGAGCCATAATGAAATCTTGCAGATGTACAGAGAATATATTGATCCCACTTTCAAGTGGACAAACTTTACTCTTGAAGAACAGGCAAAAGTCATAGTTGCTCCTCGAAGTAATAATGAACTGAATGCCACCAAGTTGAAGACGGAATTTCCACAGTTGCTGTCAGTAAAAGATTCATTATTGAAGTATGTCTTTGAGCCCAACAGGAAGAACAAGTTAGCCAATGGAGTTTAGTCCTTGCTTAAGATCAAATTTTCATTAGGTGTAGTAAAGTTTTTCTCTGCTTAGGCAGGCAAAACATCCATATGCTTAATTGGGGGACAATTCAAAAGGTCGTCCAGTACTTTGTTATTTTTAGCTCACAAATGGAGGAGAGCTCATTTGGTAGGATATTCTAGATATGTTCTACTATTTTTCTTCTGATTTTACATTTTAGTTCACCAACGGAGGAGCCGACTAGCTAGGGTATTCTAGATAGGTTCTACAATTCTTGTTCTGTTTTTATATTTACATTCTTTCTATGAATGTAAGTCAACTTACAAGGTTAATGCCATTGAATTTCCGCTTCCAAGAAATTCTACTATTTGGAATATATTCGTCTTTGACAAGACTGTTCTTCTTGTATGAAAAAAGTTCTCACATTTTTATAAAATAACTGCTCAAGCTTTGTGTAGTT

Ace file of the UniGene biog3_v1.0_unigene3899

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5209	92/93

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4,6-dehydratase [Arabidopsis thaliana] sp\|Q9SYM5.1\|RHM1_ARATH RecName: Full=Probable rhamnose biosynthetic enzyme 1 gb\|AAD30579.1\|AC007260_10 Similar to dTDP-D-glucose 4,6-dehydratase [Arabidopsis thaliana] gb\|AAK68773.1\| Similar to dTDP-D-glu	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	probable rhamnose biosynthetic enzyme 1-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	dTDP-4-dehydrorhamnose reductase.	EC:1.1.1.133	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Biosynthesis of secondary metabolites	01110		89%
Blast2go	UDP-glucose 4,6-dehydratase.	EC:4.2.1.76	-	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	89%
Blast2go	dTDP-glucose 4,6-dehydratase.	EC:4.2.1.46	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Polyketide sugar unit biosynthesis	00523	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	extracellular polysaccharide biosynthetic process	GO:0045226	Biological Process	89%
Blast2go	UDP-rhamnose biosynthetic process	GO:0010253	Biological Process	89%
Blast2go	flavonol biosynthetic process	GO:0051555	Biological Process	89%
Blast2go	auxin efflux	GO:0010315	Biological Process	89%
Blast2go	dTDP-4-dehydrorhamnose reductase activity	GO:0008831	Molecular Function	89%
Blast2go	UDP-glucose 4,6-dehydratase activity	GO:0050377	Molecular Function	89%
Blast2go	UDP-L-rhamnose synthase activity	GO:0010280	Molecular Function	89%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	89%
Blast2go	dTDP-glucose 4,6-dehydratase activity	GO:0008460	Molecular Function	89%
Blast2go	soluble fraction	GO:0005625	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN20

Fln msg: your sequence is longer than subject: 591 - 300

Fln protein: MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGLIRRFIHVSTDEVYGETEKDAIEGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYDLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTQKERRVIDVAKDICRLFSLDAEKVIKFVDNRPFNDQRYYLDDKKLKDLGWSERTKWEEGLKKTMDWYIRQPDWWGDVSGALLPHPRMLTMAGVERYTEAHDVVDTTSPSPENGIEQNHMLERSNGLIPKSTLKFLIYGRNGWIGGLLGQICQKQGITYEYGNGRLENRSQILMDIQNIKPTHVFNAAGVTGRPNVDWCESHKPETITTNVAGTLNLADICKEQGLLLVNFATGCIFEYDDAHLEGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLQNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTVLDELLPISIEMAKRNCTGIWNFTNPGVVSHNEILQMYREYIDPTFKWTNFTLEEQAKVIVAPRSNNELNATKLKTEFPQLLSVKDSLLKYVFEPNRKNKLANGV*

Protein Length: 592

Fln nts: AATGTAGAATCTCCTGCCCTCCAGGTCTTCTCCCAATTTCAAATTTGTGAAGGGAGATATTGGGAGTGCAGATCTGGTAAATTATCTGCTGATCACAGAACAGATTGATACTATA_-_ATGCATTTTGCGGCACAAACCCATGTGGACAATTCATTTGGGAACAGCTTTGAGTTCACCAAGAACAACATCTATGGTACTCATGTCCTTCTTGAAGCATGCAAGGTGACTGGATTGATCAGAAGATTCATTCATGTGAGCACTGATGAAGTTTATGGTGAAACAGAGAAGGATGCCATTGAGGGAAATCATGAGGCCAGTCAGCTTTTACCCACTAATCCTTATTCTGCAACCAAGGCAGGAGCAGAGATGCTGGTCATGGCTTATGGGAGATCCTACGATTTGCCTGTGATCACCACAAGAGGTAACAATGTATATGGACCTAATCAGTTTCCTGAAAAACTGATACCCAAGTTCATTCTTCTGGCGATGCAAGGGAAGCCACTCCCAATCCATGGCGACGGATCCAATGTTAGGAGCTATTTGTACTGCGAGGACGTTGCTGAGGCTTTTGAAGTCGTTTTGCATAAAGGTGAAGTGGGGCATGTGTATAATATTGGTACACAAAAGGAGAGAAGGGTCATTGATGTGGCCAAGGATATCTGTAGGCTCTTTTCATTAGATGCAGAGAAGGTTATAAAGTTTGTAGACAACAGGCCTTTCAATGATCAGAGATATTATCTGGATGATAAGAAACTCAAGGATCTGGGATGGTCTGAGAGGACTAAATGGGAAGAGGGCTTGAAGAAAACAATGGATTGGTACATTAGACAACCTGATTGGTGGGGTGATGTGTCCGGTGCTCTGCTACCTCATCCAAGGATGCTCACAATGGCAGGAGTTGAGAGGTATACAGAAGCCCATGATGTGGTTGACACAACATCTCCCTCGCCAGAGAATGGCATCGAGCAGAATCACATGCTAGAGCGCTCCAACGGCCTTATTCCAAAGTCAACCTTGAAGTTCTTGATCTATGGGCGCAATGGCTGGATCGGAGGGCTTCTTGGGCAGATATGCCAAAAGCAGGGAATTACATATGAATATGGAAATGGGAGATTAGAGAATAGGTCTCAGATCCTAATGGACATACAGAACATCAAGCCTACTCATGTGTTTAATGCTGCAGGTGTGACAGGTCGGCCTAACGTGGATTGGTGTGAATCCCACAAGCCCGAGACTATTACAACCAATGTGGCGGGAACACTGAATTTGGCTGATATTTGCAAGGAGCAGGGTCTTTTGCTTGTAAATTTTGCAACTGGCTGTATTTTTGAATATGACGATGCTCATCTTGAAGGCAGTGGTATTGGATTTAAGGAGGAAGACAAACCCAACTTCATTGGGTCCTTTTATTCGAAGACCAAGGCCATGGTTGAAGATCTCCTACAAAATTTTGAAAATGTCTGTACTCTTAGGGTGAGAATGCCCATCTCCTCGGACCTGAGTAACCCTCGCAATTTCATCACAAAGATCACTCGATATGAGAAAGTGGTAAATATACCAAACAGTATGACAGTCCTTGATGAGTTGCTGCCAATCTCGATTGAGATGGCAAAAAGAAATTGCACTGGCATATGGAACTTCACTAACCCAGGTGTTGTGAGCCATAATGAAATCTTGCAGATGTACAGAGAATATATTGATCCCACTTTCAAGTGGACAAACTTTACTCTTGAAGAACAGGCAAAAGTCATAGTTGCTCCTCGAAGTAATAATGAACTGAATGCCACCAAGTTGAAGACGGAATTTCCACAGTTGCTGTCAGTAAAAGATTCATTATTGAAGTATGTCTTTGAGCCCAACAGGAAGAACAAGTTAGCCAATGGAGTTTAG___TCCTTGCTTAAGATCAAATTTTCATTAGGTGTAGTAAAGTTTTTCTCTGCTTAGGCAGGCAAAACATCCATATGCTTAATTGGGGGACAATTCAAAAGGTCGTCCAGTACTTTGTTATTTTTAGCTCACAAATGGAGGAGAGCTCATTTGGTAGGATATTCTAGATATGTTCTACTATTTTTCTTCTGATTTTACATTTTAGTTCACCAACGGAGGAGCCGACTAGCTAGGGTATTCTAGATAGGTTCTACAATTCTTGTTCTGTTTTTATATTTACATTCTTTCTATGAATGTAAGTCAACTTACAAGGTTAATGCCATTGAATTTCCGCTTCCAAGAAATTCTACTATTTGGAATATATTCGTCTTTGACAAGACTGTTCTTCTTGTATGAAAAAAGTTCTCACATTTTTATAAAATAACTGCTCAAGCTTTGTGTAGTT

Fln Alignment:

Contig3899___LKFLIYGRNGWIGGLLGQICQKQGITYEYGNGRLENRSQILMDIQNIKPTHVFNAAGVTGRPNVDWCESHKPETITTNVAGTLNLADICKEQGLLLVNFATGCIFEYDDAHLEGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLQNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTVLDELLPISIEMAKRNCTGIWNFTNPGVVSHNEILQMYREYIDPTFKWTNFTLEEQAKVIVAPRSNNELNATKLKTEFPQLLSVKDSLLKYVFEPNRK
A9NN20_________________LKFLIYGRTGWIGGEIGKLCEAQGIAFEFGKGRLENRSQLQEDIEAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLNLADLCRQHGLILINYATGCIFEYDEKHPLGSGIGFKEEDTPNFMGSYYSKTKAMVEDLLKNFENVCTLRVRMPISSDLSNPRNFITKISRYDKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRDYIDPSYTWRNFTLEEQAKVIVAARSNNEMDASKLKKEFPELLPIKESLVKYVFEPNQK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1360	10		90		0.90298
1389		85		14	0.993533
1390		83		16	0.994512
1425			80	20	0.995493
1509	10	90			0.90298
1510		90		10	0.90298
1578	16	83			0.994512
1615	75		25		0.996473
1616	75			25	0.996473
1696	90			10	0.90298
1773		11		88	0.923564
1775	88			11	0.923564
1780	11	88			0.923564
1817		10		90	0.90298
1818	10		90		0.90298
1819		90		10	0.90298
1834	11			88	0.923564
1939	25			75	0.996473
1943			80	20	0.995493
2060	40			60	1.0
2233	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain