SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3873

Length: 1057 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3873 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7185	19/29
SustainPine v2.0	sp_v2.0_unigene60912	10/29

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=2 Tax=Picea sitchensis RepID=B8LMJ5_PICSI	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	ubiquitin-conjugating enzyme	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	0.0	91%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Tryptophan metabolism	00380		0.0	91%
Blast2go	Biosynthesis of siderophore group nonribosomal peptides	01053		0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	post-translational protein modification	GO:0043687	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	acid-amino acid ligase activity	GO:0016881	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Sma3		IPR015580	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
708	33		33	33	0.997753
709	66		33		0.997452
870	14		85		0.993533
872			14	85	0.993533
989	16		83		0.994512
990		83		16	0.994512
991			83	16	0.994512
1004		20		80	0.995493
1006			80	20	0.995493
1007	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain