SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3867

Length: 1249 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3867

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25955	1/40
SustainPine v2.0	sp_v2.0_unigene28319	38/40

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone protein htpG family protein [Arabidopsis thaliana] gb\|AAL32008.1\|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|AAD32922.1\| putative heat shock protein [Arabidopsis thaliana] gb\|AAK96633.1\| At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|A	-	-	69%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	49%
Blast2go	heat-shock protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	response to chlorate	GO:0010157	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	de-etiolation	GO:0009704	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	cell wall	GO:0005618	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L28	IPR001383	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Sterile alpha motif, type 2	IPR011510	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Distance to subject end: 522 aas, your sequence is shorter than subject: 343 - 834

Fln protein: MYQASRRSVSAAVRSPVLVRALAAPTPPCSPSAPVTIEGASTTYCPSRPFTSLELCRTAKSGLSKLEQTAGFSAASNLKIKQTIPGIARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGGELEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTEDKLEYSDPERIKNLVKNYSQFVSFPIYVWEEKSQTVEVEDDSAEAKEGETAKPEG

Protein Length: 344

Fln nts: AATGTCCTTTAAACCCTAGTGAGGGTTTATGCTCCATATCAACGAGTGCCAGGCTTAAGCAGTTATGTTTCGCTGACAATTAACGGGACACTGGCCCTCATCAACAATCCATCAATCCTCAATTTCTCTCCAGTTCGAAGAGGCATCAGAGGTTCTAGGTTTCATACATTTTGCAGGGTGTAACGAGTAATTTTTATTTTCTTTGGCTGAGAAACCAAA_-_ATGTATCAGGCCTCGAGGCGTTCCGTCTCAGCAGCAGTTCGATCCCCGGTATTGGTTCGAGCTCTCGCAGCGCCGACGCCGCCTTGCTCTCCCTCGGCTCCGGTTACTATAGAAGGGGCCAGTACAACCTACTGCCCTTCACGGCCATTTACTTCTTTGGAGTTATGTCGCACTGCGAAATCAGGATTATCAAAGCTTGAGCAGACAGCTGGTTTTTCTGCTGCTTCAAACTTGAAGATAAAACAAACAATACCTGGCATTGCTAGGTATGAAACCACAGTAGCACAGCAGGAAACGGCAGACGAATCGGTTGAAAAACATGAGTATCAAGCAGAGGTTAGTCGTCTTTTGGATTTGATAGTACACAGCTTGTACAGTCACAAGGAAGTATTCCTCCGTGAGTTAGTCAGTAATGCTAGTGATGCACTGGATAAATTGCGCTTCTTAAGCGTGACAGATTCAAGTCTTCTTGGTAATGGAGGTGAATTAGAGATTCGTATCAAGGCAGACAAGGAGAATGGAACAATTACCTTGATTGATACTGGTATTGGAATGACAAAAGAAGAACTGGTGGATTGCTTGGGAACTATAGCTCAGAGTGGAACCGCTAAGTTTTTGAAAGCTTTGAGGGATAGCAAGGAAGCTGGTTCTGACAGCAATTTGATTGGTCAATTTGGTGTTGGGTTTTATTCAGCTTTTCTGGTCTCTGATCGGATAGTTGTCTCAACAAAGAGCCCAAAGTCTGACAAGCAATACGTGTGGGAAGGAGAAGCAGACAACAACTCATACGTCATAAGGGAGGAGACAAACCCTGATAGTTTGCTTCCAAGAGGAACCAGCATTACTCTACATTTAAAGACTGAAGACAAGCTCGAGTACTCTGATCCTGAAAGGATTAAGAATCTTGTTAAAAATTATTCACAATTTGTTTCCTTCCCAATATATGTATGGGAGGAGAAGTCTCAGACTGTAGAGGTTGAGGATGACTCAGCTGAAGCAAAAGAGGGTGAAACAGCAAAACCAGAGGGCC

Fln Alignment:

Contig3867___IARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGG--ELEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTEDKLEYSDPERIKNLVKNYSQFVSFPIYVWEEKSQTVEVEDDSAEAKEGETAKPE
A7YAU9_________________VAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQM----QKGGDLNLIGQLGVGFYSVYLVADHVEVISKN-NDDKQYIWESKAD-GAFAVSEDTENEP-LGRGTEIRLHLKDEAS-EYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
14	66		33		0.997452
15		66		33	0.997452
85	16	83			0.994512
86	16		83		0.994512
87			83	16	0.994512
89	83			16	0.994512
1185	25			75	0.996473
1189		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain