SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3841

Length: 257 nt

UniGene Fasta

>biog3_v1.0_unigene3841
AATGTACTAAATAATAAGTGAATCTATTACCTTCTATTAGCATGTTACTGTGCTTGTTATTGACATTAAATTAATCAAGATTTGACACTGACCTGCTTTGTGCAATAGGTTTTTCAACGCATTGATATTGTTGGAAGGGAGTTTGATAACATTGTAAACCTTCAGATTGGCACTCCCTGGCCACTCCCACAGATTGAAGTTATTGCTACTTTGGCCCACAGCTTTGAACTTCTAGGTATGTTTACCTCCATATGTTT

Ace file of the UniGene biog3_v1.0_unigene3841

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6597	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	harpin binding protein 1 [Vitis sp. NL-2003]	-	-	3.0e-12	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	harpin binding protein 1	-	-	1.6323e-17	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	structural molecule activity	GO:0005198	Molecular Function	1.6323e-17	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.6323e-17	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipocalin	IPR002345	-	0.0	-
Sma3	Plastid lipid-associated protein/fibrillin conserved domain	IPR006843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ07

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 63 aas, your sequence is shorter than subject: 85 - 282

Fln protein: NVLNNK*IYYLLLACYCACY*H*INQDLTLTCFVQ*VFQRIDIVGREFDNIVNLQIGTPWPLPQIEVIATLAHSFELLGMFTSIC

Protein Length: 86

Fln nts: AATGTACTAAATAATAAGTGAATCTATTACCTTCTATTAGCATGTTACTGTGCTTGTTATTGACATTAAATTAATCAAGATTTGACACTGACCTGCTTTGTGCAATAGGTTTTTCAACGCATTGATATTGTTGGAAGGGAGTTTGATAACATTGTAAACCTTCAGATTGGCACTCCCTGGCCACTCCCACAGATTGAAGTTATTGCTACTTTGGCCCACAGCTTTGAACTTCTAGGTATGTTTACCTCCATATGTTT

Fln Alignment:

Contig3841___VFQRIDIVGREFDNIVNLQIGTPWPLPQIEVIATLAHSFELLG
A9NZ07_________________VFQRIDIVGREFDNIVNLQIVTPWPLPPIEVIANLAHSFELVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain