SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3837

Length: 499 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3837
CGGATTCCTGTGTGGTGGAGATGGTATTACTGGGCTTCTCCCTTTGCATGGACTCTGTATGGACTGGTAGCATCTCAGTTCGGGGATATATCGGATGAAATGGTGATGGCCGATGGTGGTAAACAAGAAGTGAACAAAAGAGGGGGCAAGATGTATGTGCAAGACAAGATTGAGGAGTACAGTGATGAAATTTTTGAGCTTCTGGATAAAGGAGCTCATATCTACTTCTGTGGATTGAAGGGCATGATGCCTGGAATTCAAGATACCTTAAAAAGAGTTGCAGAAGAGAGAGGAGAAAGTTGGGATGAGAGATTTTCACAGCTTAAGAAGAAAAAGCAGTGGCATGTAGAAGTTTATTAGTAATTTTATAGAGCTTAACTTCATCCTCCTAGGGCAATCTCCAATAAACCTTGGCCAAATTGATAGTTATTGTTTTGTCTTTTTGAGAATATCAATCTAAGATTTTATATGCAAGGCTCAACTATATTTAATTTACATT

Ace file of the UniGene biog3_v1.0_unigene3837 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7412	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ferredoxin--NADP reductase n=1 Tax=Ricinus communis RepID=B9SB31_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	ferredoxin--nadp root chloroplastic-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferredoxin--NADP(+) reductase.	EC:1.18.1.2	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Photosynthesis	00195		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	87%
Blast2go	photosynthesis	GO:0015979	Biological Process	87%
Blast2go	electron transport chain	GO:0022900	Biological Process	87%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	87%
Blast2go	NADP binding	GO:0050661	Molecular Function	87%
Blast2go	ferredoxin-NADP+ reductase activity	GO:0004324	Molecular Function	87%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	-
Sma3	Ferredoxin-NADP+ reductase	IPR012146	-	-
Sma3	Ferredoxin Reductase	IPR015701	-	-
Sma3	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNX5

Fln msg: your sequence is shorter than subject: 120 - 382

Fln protein: RIPVWWRWYYWASPFAWTLYGLVASQFGDISDEMVMADGGKQEVNKRGGKMYVQDKIEEYSDEIFELLDKGAHIYFCGLKGMMPGIQDTLKRVAEERGESWDERFSQLKKKKQWHVEVY*

Protein Length: 121

Fln nts: CGGATTCCTGTGTGGTGGAGATGGTATTACTGGGCTTCTCCCTTTGCATGGACTCTGTATGGACTGGTAGCATCTCAGTTCGGGGATATATCGGATGAAATGGTGATGGCCGATGGTGGTAAACAAGAAGTGAACAAAAGAGGGGGCAAGATGTATGTGCAAGACAAGATTGAGGAGTACAGTGATGAAATTTTTGAGCTTCTGGATAAAGGAGCTCATATCTACTTCTGTGGATTGAAGGGCATGATGCCTGGAATTCAAGATACCTTAAAAAGAGTTGCAGAAGAGAGAGGAGAAAGTTGGGATGAGAGATTTTCACAGCTTAAGAAGAAAAAGCAGTGGCATGTAGAAGTTTATTAG___TAATTTTATAGAGCTTAACTTCATCCTCCTAGGGCAATCTCCAATAAACCTTGGCCAAATTGATAGTTATTGTTTTGTCTTTTTGAGAATATCAATCTAAGATTTTATATGCAAGGCTCAACTATATTTAATTTACATT

Fln Alignment:

Contig3837___KQEVNKRGGKMYVQDKIEEYSDEIFELLDK-GAHIYFCGLKGMMPGIQDTLKRVAEERGESWDERFSQLKKKKQWHVEVY
A9NNX5_________________REQTNEKGEKMYIQTRMGEYAKELWGLFKKENTYVYMCGLKGMEKGIDDIITSLAAEEGIDWNEYKRQMKKSERWNVEVY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
195	33			66	0.997452
196	33	66			0.997452
197		66		33	0.997452
198		66	33		0.997452
199	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain