SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3791

Length: 357 nt

UniGene Fasta

>biog3_v1.0_unigene3791
TTAAAGCTTCTCCTGGTGTGTGGACTCTACAACTTGCTCCAGGAAGATCTGCTGACCTTTACACGTTAGAAGGGACACGTGAAGGAACCGAGGAGGGCCCTAAGACGAAAAGGATAGTAATTGACAATTTAGGAGTACATTTAATTCACCTCAACGTAGTGAAGAAGAAAGGAAAAGAGAAGGAACAAATACTTATTAATGCAGATGAGATTGATGATGATGGTCCCTCACAGGAAGGAAAGGGGGTAAGCAGAAGGGATGGAATAAAGGATTTCTAAAATGGGCATCTGGTTTGATTGGTGGTGAAGACAAGCAGATAGATACAAATAGGCAATTCACCTGTTCAAGGGCTGATGG

Ace file of the UniGene biog3_v1.0_unigene3791

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2121	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose:glycoprotein glucosyltransferase n=3 Tax=Arabidopsis RepID=F4I8G1_ARATH	-	-	78%
FL-Next	sp=UDP-glucose:glycoprotein glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	udp-glucose:glycoprotein glucosyltransferase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	83%
Blast2go	protein glycosylation	GO:0006486	Biological Process	83%
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	83%
Blast2go	anthocyanin metabolic process	GO:0046283	Biological Process	83%
Blast2go	UDP-glucose:glycoprotein glucosyltransferase activity	GO:0003980	Molecular Function	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	UDP-glucose:Glycoprotein Glucosyltransferase	IPR009448	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WL80

Fln msg: Separated hits, possible frame ERROR between 239 and 248, Distance to subject end: 317 aas, your sequence is shorter than subject: 118 - 1613

Fln protein: KASPGVWTLQLAPGRSADLYTLEGTREGTEEGPKTKRIVIDNLGVHLIHLNVVKKKGKEKEQILINADEIDDDGPSQExxxxKQKGWNKGFLKWASGLIGGEDKQIDTNRQFTCSRAD

Protein Length: 119

Fln nts: TTAAAGCTTCTCCTGGTGTGTGGACTCTACAACTTGCTCCAGGAAGATCTGCTGACCTTTACACGTTAGAAGGGACACGTGAAGGAACCGAGGAGGGCCCTAAGACGAAAAGGATAGTAATTGACAATTTAGGAGTACATTTAATTCACCTCAACGTAGTGAAGAAGAAAGGAAAAGAGAAGGAACAAATACTTATTAATGCAGATGAGATTGATGATGATGGTCCCTCACAGGAAGGxxxxxxxxxTAAGCAGAAGGGATGGAATAAAGGATTTCTAAAATGGGCATCTGGTTTGATTGGTGGTGAAGACAAGCAGATAGATACAAATAGGCAATTCACCTGTTCAAGGGCTGATGG

Fln Alignment:

Contig3791___KASPGVWTLQLAPGRSADLYXXXXXXXXXXXXPKTKRIVIDNLGVHLIHLNVVKKKGKEKEQILINADEIDDDGPSQEGxxxKQKGWNKGFLKWASGLIGGEDKQI
Q0WL80_________________KVSPGVWYLQLAPGRSSELYALKGGNDGSQDQSSLKRITIDDLRGKVVHLEVVKRKGKEHEKLLVPSDGDDAVQQNKEGxxxKEGSWNSNFLKWASGFVGGRQQSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain