SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3780

Length: 889 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3780

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene341	15/17
SustainPine v2.0	sp_v2.0_unigene34916	2/17

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cysteine protease ATG4B; AltName: Full=Autophagy-related protein 4 homolog B; Short=Protein autophagy 4; AltName: Full=OsAtg4	-	-	56%
FL-Next	sp=Cysteine protease ATG4A; Oryza sativa subsp. indica (Rice).	-	-	59%
Blast2go	cysteine protease atg4-like	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine-type carboxypeptidases.	EC:3.4.18.-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	autophagy	GO:0006914	Biological Process	74%
Blast2go	protein transport	GO:0015031	Biological Process	74%
Blast2go	cysteine-type carboxypeptidase activity	GO:0016807	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	APG8-specific protease activity	GO:0019786	Molecular Function	74%
Blast2go	autophagic vacuole	GO:0005776	Cellular Component	74%
Blast2go	vacuolar lumen	GO:0005775	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Peptidase C54	IPR005078	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: A2XHJ5

Fln msg: your sequence is shorter than subject: 282 - 473

Fln protein: FRDSPSEASPFSIHNLLEAGKPYGLAAGNWLGPYAMCRSWEELARTEKEHYMLGKSKIALPMAVYIVSGDENGERGGAPVICIDDAVRLCSEWSNGQGEDQVPILILVPLVLGVEKINPRYVPSLRETFTFPQSLGIAGGKPGASTYIVGVQDDQALYLDPHEVQQVVEISPDNMGVDTGSYHCSNVRQLPLSAIDPSLAIGFYCRNRDNFDDLCLRASVLASQSEGAPLFTVAQSLNKSKQNDALTSEGGKSVVTVPEELLLESESMTAVPSSEDDWQIH*

Protein Length: 283

Fln nts: TTTTCGAGATTCTCCTTCAGAGGCTTCTCCCTTCTCAATACACAATTTGCTTGAAGCTGGAAAGCCTTATGGCCTAGCTGCTGGAAATTGGTTAGGACCATATGCCATGTGTCGTTCGTGGGAGGAACTTGCTCGGACTGAAAAGGAGCATTATATGTTGGGGAAGTCCAAGATTGCATTGCCTATGGCAGTTTATATTGTTTCTGGTGATGAAAATGGTGAACGTGGAGGGGCTCCAGTTATCTGCATTGATGATGCTGTGAGGCTGTGTTCAGAGTGGTCCAATGGACAAGGGGAAGACCAGGTGCCAATCCTGATTTTGGTTCCGCTTGTTCTTGGTGTGGAGAAGATCAACCCAAGGTATGTACCATCACTTCGTGAAACATTCACATTTCCCCAAAGTCTTGGTATTGCTGGTGGAAAGCCTGGAGCTTCAACATATATTGTTGGTGTTCAGGATGATCAAGCTCTGTACTTAGATCCACATGAAGTGCAGCAGGTGGTGGAGATCTCTCCTGATAATATGGGGGTTGATACTGGTTCTTATCATTGCAGTAATGTACGCCAGCTGCCACTTAGTGCTATTGATCCATCATTAGCTATAGGCTTTTACTGCCGGAATAGAGATAATTTTGACGACTTGTGCTTACGCGCATCTGTTCTCGCAAGTCAATCAGAAGGTGCTCCATTGTTCACTGTTGCTCAGAGTCTCAACAAATCAAAGCAAAATGATGCCTTGACATCTGAGGGAGGGAAATCAGTGGTTACTGTTCCAGAAGAGTTGCTCCTGGAAAGTGAAAGTATGACAGCTGTACCTTCTAGTGAAGATGATTGGCAAATACATTAA___TATCATAGACAAGATTGTTGGTGGCTCTTGACTAACAACATT

Fln Alignment:

Contig3780___SEASPFSIHNLLEAGKPYGLAAGNWLGPYAMCRSWEELARTEKEHYMLGKSKIALPMAVYIVSGDENGERGGAPVICIDDAVRLCSEWSNGQGEDQXXXXXXXXXXXXXEKINPRYVPSLRETFTFPQSLGIAGGKPGASTYIVGVQDDQALYLDPHEVQQVVEISPDNMGVDTGSYHCSNVRQLPLSAIDPSLAIGFYCRNRDNFDDLCLRASVLASQSEGAPLFTVAQSLNKSKQ--NDALTSEGGKSVVTVPEELLLESESMTAVPSSEDDWQI
A2XHJ5_________________SEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQST-WSPILLLVPLVLGLDKLNPRYIPLLKETFTFPQSLGILGGKPGTSTYVAGVQDDRVLYLDPHEVQLAVDIAADNLEADTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSRASELVDKANGAPLFTVMQSVQPSKQMYNEESSSGDGMDIINVEG---LDGSGET----GEEEWQI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
375	25			75	0.996473
376	25			75	0.996473
377		75		25	0.996473
470	11			88	0.923564
471	11	88			0.923564
507			75	25	1.0
529	20		80		0.995493
709	20		80		0.995493
711		80	20		0.995493
843	66			33	0.997452
845	66			33	0.997452
846		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain