SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3771

Length: 402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3771
CGGAGGAAACGAAGCAGAAACAGCAGCATGGCAAGTGTCTCTTATCCGACCATATTTCACAATATCATTCCACGCCCATTGTCTGTGAGCACCCGCCTGCGACGTTGCCATGTCACATTTTGCAGCCTCAAGGAGGAGACGAATGGACAAGGGGAACCAGATGAGCAGAAGACGACTAAAACAGTATTTGTTGCAGGTGCCACAGGAAACACAGGCAAACGGATTGTAACACAGCTCTTATCCAAAGGATTCAATGTCAGGGCTGGTGTCCGCGATGTGGACAGCGCCAAGAACAATTTCCCCTCTAATGACACCAAACTTCAAATTGTCAAGGCAGATGTGACAGAGGGTGCTGCTAAACTGAGTGAAGCAATAGGCAATGCTGAAGCTGTCATCTGTGCA

Ace file of the UniGene biog3_v1.0_unigene3771 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene165	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	NAD(P)-binding Rossmann-fold-containing protein [Arabidopsis thaliana] sp\|Q8H124.1\|Y2446_ARATH RecName: Full=Uncharacterized protein At2g34460, chloroplastic; Flags: Precursor gb\|AAN41284.1\| unknown protein [Arabidopsis thaliana] gb\|AEC08977.1\| NAD(P)-bin	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	uncharacterized protein chloroplastic-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	81%
Blast2go	plastoglobule	GO:0010287	Cellular Component	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWJ7

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 125 - 285

Fln protein: MASVSYPTIFHNIIPRPLSVSTRLRRCHVTFCSLKEETNGQGEPDEQKTTKTVFVAGATGNTGKRIVTQLLSKGFNVRAGVRDVDSAKNNFPSNDTKLQIVKADVTEGAAKLSEAIGNAEAVICA

Protein Length: 126

Fln nts: CGGAGGAAACGAAGCAGAAACAGCAGC_-_ATGGCAAGTGTCTCTTATCCGACCATATTTCACAATATCATTCCACGCCCATTGTCTGTGAGCACCCGCCTGCGACGTTGCCATGTCACATTTTGCAGCCTCAAGGAGGAGACGAATGGACAAGGGGAACCAGATGAGCAGAAGACGACTAAAACAGTATTTGTTGCAGGTGCCACAGGAAACACAGGCAAACGGATTGTAACACAGCTCTTATCCAAAGGATTCAATGTCAGGGCTGGTGTCCGCGATGTGGACAGCGCCAAGAACAATTTCCCCTCTAATGACACCAAACTTCAAATTGTCAAGGCAGATGTGACAGAGGGTGCTGCTAAACTGAGTGAAGCAATAGGCAATGCTGAAGCTGTCATCTGTGCA

Fln Alignment:

Contig3771___MASVSYPTIFH----NIIPRPLSVSTRLRRCHVTFCSLKEETNGQGEPDEQKTTKTVFVAGATGNTGKRIVTQLLSKGFNVRAGVRDVDSAKNNFPSNDTKLQIVKADVTEGAAKLSEAIGNAEAVICA
A9NWJ7_________________MASASYPTIFRLSSDNFIPRPSPLGARLRRCHVTFCSLKEEKDGQGEPNEQRTTKTVFVAGATGNTGKRIVTQLLSKGFNVKAGVRDVDSAKNNFPT-DTNIQFVKADVTEGAAKLSEAIGDAEAVICA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
221	33		66		0.997452
222		33		66	0.997452
223	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain