SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3751

Length: 838 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3751 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene206	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	gras family transcription factor	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate phosphoribosyltransferase.	EC:2.4.2.18	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	81%
Blast2go	signal transduction	GO:0007165	Biological Process	81%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	81%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
215	20			80	0.995493
218		80	20		0.995493
219			80	20	0.995493
382	20			80	0.995493
384			20	80	0.995493
422	80			20	0.995493
466	20			80	0.995493
467	20			80	0.995493
469	80		20		0.995493
470	80			20	0.995493
559	16			83	0.994512
562	83		16		0.994512
627	20	80			0.995493
630	80			20	0.995493
631	80			20	0.995493
754	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain