SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3733

Length: 514 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3733
TCTGATAGACGACTTCAAGGAGGCCATATGTTCATCCTTAGAGGACTATAATAAGCAGATTGAGGGGTTGAAGCAGGAGATGAATGATGCAACACATGGAGCAGACAATATCAGAAATGACATTAGTGCTTTGGCACAAAGATATGCCATTGTTGACAGCAATGAAGAGTGTGGGGTTTGCGGACGAAAAATATTGGCCTCAAGTGGGCATGGAATGGCCAGGGGTTTTGCGTCACCTATGGCCCCATTTTATGTCTTTCCTTGTGAACATACTTTTCATGCACAATGTCTTATTGGACATGTTACAAAACACACAGATCCAGCTGAGGCAGAGCGCATACTCGATCTGCAGCGGAGACTGAGTTTACTCGTCAATTCAGGGACAAGCTTTGCTGTGGAGAGGATGTCAAATGTTGCAGACGAAGAAGCATCTGCCAGCAATAGAACGCCCACAGATCAGATTCGTGCACAGCTTGATGATGCTGTAGCTGGTGAATGCCCATTTTGTGACATT

Ace file of the UniGene biog3_v1.0_unigene3733 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3648	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	7-fold repeat in clathrin and VPS proteins repeat-containing protein [Dictyostelium discoideum AX4] gb\|EAL72312.1\| 7-fold repeat in clathrin and VPS proteins repeat-containing protein [Dictyostelium discoideum AX4]	-	-	7.0e-40	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	68%
Blast2go	vacuolar protein sorting-associated protein 18 homolog	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Pep3/Vps18/deep orange	IPR007810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TD08

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 171 - 986

Fln protein: LIDDFKEAICSSLEDYNKQIEGLKQEMNDATHGADNIRNDISALAQRYAIVDSNEECGVCGRKILASSGHGMARGFASPMAPFYVFPCEHTFHAQCLIGHVTKHTDPAEAERILDLQRRLSLLVNSGTSFAVERMSNVADEEASASNRTPTDQIRAQLDDAVAGECPFCDI

Protein Length: 172

Fln nts: TCTGATAGACGACTTCAAGGAGGCCATATGTTCATCCTTAGAGGACTATAATAAGCAGATTGAGGGGTTGAAGCAGGAGATGAATGATGCAACACATGGAGCAGACAATATCAGAAATGACATTAGTGCTTTGGCACAAAGATATGCCATTGTTGACAGCAATGAAGAGTGTGGGGTTTGCGGACGAAAAATATTGGCCTCAAGTGGGCATGGAATGGCCAGGGGTTTTGCGTCACCTATGGCCCCATTTTATGTCTTTCCTTGTGAACATACTTTTCATGCACAATGTCTTATTGGACATGTTACAAAACACACAGATCCAGCTGAGGCAGAGCGCATACTCGATCTGCAGCGGAGACTGAGTTTACTCGTCAATTCAGGGACAAGCTTTGCTGTGGAGAGGATGTCAAATGTTGCAGACGAAGAAGCATCTGCCAGCAATAGAACGCCCACAGATCAGATTCGTGCACAGCTTGATGATGCTGTAGCTGGTGAATGCCCATTTTGTGACATT

Fln Alignment:

Contig3733___LIDDFKEAICSSLEDYNKQIEGLKQEMNDATHGADNIRNDISALAQRYAIVDSNEECGVCGRKIL-ASSGHGMARGFAS--PMAPFYVFPCEHTFHAQCLIGHVTKHTDPAEAERILDLQRRLSLLVNSGTSFAVERMSNVADEEASASNRTPTDQIRAQLDDAVAGECPFC
D7TD08_________________LIDDFKEAICSSLEDYNKQIELLKQEMNDATHGADNIRNDISALAQRYALIDRDEECGVCRRKILTVGADFRMTRGYTSVGPMAPFYVFPCGHAFHAQCLITHVTQCTTRAQAELILDLQKQLTLLDGN-----TRRESNGGLTEESITSMTPADKIRSQLDDAIAGECPFC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
401	20			80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain