SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3699

Length: 341 nt

UniGene Fasta

>biog3_v1.0_unigene3699
GGAGCTGCTATGGAAAAAGCAACCATATAAAACTATTGCCATTCGCGCAGGAACAAGACGACGAGATCATGGAGGCCAAGGCGGGACTTGTTGCTGGTTCCTATAAGCGGAACGAGCTTATGGTAGTCCCTGGACACGATGGGCCCAAGCCCATCAGGCTATCCACCCTTCAGGATTGCCAAGTCTGCGGAGATAAAATCGGTCGCAACCCCAATGGGGAACTATTCGTGGCCTGTAACGAGTGTGGATTCCCTGTGTGTCGTCCCTGTTATGAGTACGAGAGAAAGGATGGGAACCGGTGCTGCCCTCAGTGCAAGACTCGGTACAGGCGTCACAAAGGG

Ace file of the UniGene biog3_v1.0_unigene3699

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3129	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase catalytic subunit n=1 Tax=Pinus taeda RepID=Q5DI94_PINTA	-	-	90%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	cellulose synthase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	79%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	79%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cellulose synthase	IPR005150	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5DI94

Fln msg: Distance to subject end: 966 aas, your sequence is shorter than subject: 91 - 1057

Fln protein: MEAKAGLVAGSYKRNELMVVPGHDGPKPIRLSTLQDCQVCGDKIGRNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKG

Protein Length: 92

Fln nts: GGAGCTGCTATGGAAAAAGCAACCATATAAAACTATTGCCATTCGCGCAGGAACAAGACGACGAGATC_-_ATGGAGGCCAAGGCGGGACTTGTTGCTGGTTCCTATAAGCGGAACGAGCTTATGGTAGTCCCTGGACACGATGGGCCCAAGCCCATCAGGCTATCCACCCTTCAGGATTGCCAAGTCTGCGGAGATAAAATCGGTCGCAACCCCAATGGGGAACTATTCGTGGCCTGTAACGAGTGTGGATTCCCTGTGTGTCGTCCCTGTTATGAGTACGAGAGAAAGGATGGGAACCGGTGCTGCCCTCAGTGCAAGACTCGGTACAGGCGTCACAAAGGG

Fln Alignment:

Contig3699___MEAKAGLVAGSYKRNELMVVPGHDGPKPIRLSTLQDCQVCGDKIGRNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKG
Q5DI94_________________MEAKAGLVAGSYKRNELMVVPGHDGPKPIRRSTLQDCQVCGDKIGHNPNGELFVACNECGFPVCRPCYEYERKDGNRCCPQCKTRYRRHKG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
116	20		80		0.995493
117		80		20	0.995493
118			20	80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain