SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3695

Length: 245 nt

UniGene Fasta

>biog3_v1.0_unigene3695
TATATGGTAGAGCATATCTGGCTTTGTCTGGAGTAGGTGGATCTATTATGGAGAAAGTTAAGGGCAATACTGCACTGACTGCTGCTCTTAACACACAGTTTTTATTCCAAATTGGTATATTTACCGCTGTGCCAATGATAACGGGTTTCATCTTGGAGCAAGGATTCTTGAAAGGCCATTGTTAGTTTCTTCACAAATGCAGCTGCAGCTATGCTCTATATTTTTCACATTTTCTCTTGGACATT

Ace file of the UniGene biog3_v1.0_unigene3695

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5119	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative callose synthase catalytic subunit n=1 Tax=Gossypium hirsutum RepID=Q9XEG1_GOSHI	-	-	76%
FL-Next	sp=Callose synthase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	callose synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	generative cell mitosis	GO:0055047	Biological Process	86%
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	86%
Blast2go	pollen germination	GO:0009846	Biological Process	86%
Blast2go	microsporogenesis	GO:0009556	Biological Process	86%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	86%
Blast2go	callose deposition in cell wall	GO:0052543	Biological Process	86%
Blast2go	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	86%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	86%
Blast2go	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SFU6

Fln msg: Separated hits, possible frame ERROR between 173 and 197, Distance to subject end: 328 aas, your sequence is shorter than subject: 81 - 1931

Fln protein: YGRAYLALSGVGGSIMEKVKGNTALTAALNTQFLFQIGIFTAVPMITGFILEQGFLxxxxxxxxxMQLQLCSIFFTFSLGH

Protein Length: 82

Fln nts: TATATGGTAGAGCATATCTGGCTTTGTCTGGAGTAGGTGGATCTATTATGGAGAAAGTTAAGGGCAATACTGCACTGACTGCTGCTCTTAACACACAGTTTTTATTCCAAATTGGTATATTTACCGCTGTGCCAATGATAACGGGTTTCATCTTGGAGCAAGGATTCTTGAAxxxxxxxxxxxxxxxxxxxxxxxxAATGCAGCTGCAGCTATGCTCTATATTTTTCACATTTTCTCTTGGACATT

Fln Alignment:

Contig3695___YGRAYLALSGVGGSIMEK--VKGNTALTAALNTQFLFQIGIFTAVPMITGFILEQGFLKxxxxxxxxMQLQLCSIFFTFSLG
Q9SFU6_________________YGRAYLALSGVGATIRERAILLDDTALSAALNAQFLFQIGVFTAVPMVLGFILEQGFLQxxxxxxxxMQFQLCTVFFTFSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain