SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3689

Length: 1213 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3689

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16601	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	DUF3411 domain containing protein	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	85%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN37

Fln msg: Overlapping hits, possible frame ERROR between 452 and 413, your sequence is longer than subject: 283 - 214

Fln protein: MLALAALGKTLETIPSDLAGAVTEGRVPAAIINRYAELEKSVLFRWLLQFGGFKERLLADDLFLAKVAMECGVGIFTKTAAELERRRENFMKEIDFVIADVVMAIVADFMLVWLPAPTVSLRxxxxxxxxxxxxxxxNCPDNAFQVALRGTSYSFLQRVGAIVRNGSKLFLVGTSASLVGTGATNLLISARKSIGTDFAGEAEDVPIVSTSIAYGVYMAVSSNLRYQIVAGVIEQRILEPWLHNKKLLLSMLCFVVRTGNTFVGSLLWVDYARWTGVQKIKE*

Protein Length: 284

Fln nts: CTTCCTCTGAGGTTCACCCCCACAACAACAACAGAGAGGAAGCG_-_ATGCTGGCGTTGGCAGCATTGGGGAAGACATTGGAGACCATTCCGAGTGATTTGGCGGGGGCAGTGACAGAGGGGCGTGTCCCTGCTGCCATTATCAATCGATATGCCGAATTGGAGAAATCGGTCCTGTTTCGATGGCTTCTTCAGTTTGGAGGATTCAAGGAACGCTTACTCGCTGACGATCTCTTCCTCGCCAAGGTTGCCATGGAATGCGGCGTCGGCATTTTCACAAAGACAGCAGCAGAGCTAGAACGCCGCAGAGAGAATTTTATGAAGGAGATAGATTTTGTAATAGCAGATGTGGTCATGGCAATAGTTGCAGATTTTATGCTTGTATGGCTTCCTGCCCCAACTGTTTCCCTACGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACTGCCCTGATAATGCTTTCCAGGTTGCTTTGAGAGGCACATCATATTCATTCCTTCAACGAGTAGGAGCGATTGTGCGTAATGGTTCAAAATTATTTTTAGTGGGGACTTCAGCATCCTTGGTTGGTACTGGAGCAACAAATTTATTGATAAGTGCTAGGAAGTCTATTGGAACGGATTTCGCTGGAGAAGCAGAAGATGTACCAATAGTTTCAACAAGTATAGCCTATGGAGTGTACATGGCAGTTTCTAGCAACCTAAGGTACCAAATAGTGGCGGGTGTTATTGAGCAGCGGATTTTGGAACCATGGCTACATAACAAGAAATTGCTGCTAAGCATGTTATGCTTTGTTGTACGAACAGGGAATACATTCGTGGGGTCATTGTTGTGGGTAGATTACGCTCGTTGGACTGGAGTACAGAAGATAAAGGAGTAG___TAACTGTGTTGAAACTTGAAATGTAGGTAATCTTTTTCACTTAGCTTATCTAGGAATCAAATGGACAGTTTCTTCCAGGCAGGTGGAAAGAAACACCAATGAATAATGGTGCATCAAATATTATGAGTAGACATTCACAAGATGAACCAGATCTCCCCAGTTAGCTTTTGGCGTCAAGGAAAAATCTTCTTACTAAATCTTTTGCACTTAAGAAATTAGTCACCTTTCAAACTCAACAGTTGTCATTCATCTATTTATTGAAAAGGTATCCAATAACTTTTTCATGTTGGATGCTGATTCTTTCTGATTAAAATTTTGCTA

Fln Alignment:

Contig3689___MECGVGIFTKTAAELERRRENFMKEXXXXXXXXXXXXXXXXXLVWLPAPTVSLRSSxxxxxxxxxxxxVYNCPDNAFQVALRGTSYSFLQRVGAIVRNGSKLFLVGTSASLVGTGATNLLISARKSIGTDFAGEAEDVPIVSTSIAYGVYMAVSSNLRYQIVAGVIEQRILEPWLHNKKLLLSMLCFVVRTGNTFVGSLLWVDYARWTGVQKIKE
A9NN37_________________MECGVGIFTKTAAELERRRENFMKEIDFVIADVVMAIVADFMLVWLPAPTVSLRPSxxxxxxxxxxxxFYNCPDNAFQVALRGTSYSFLQRVGAIVRNGAKLFLVGTSASLVGTGATNLLINARKSIGEDYAGDVEDVPIVATSIAYGVYMAVSSNLRYQILAGVIEQRILEPWLHNKKLMLSILCFAARTGNTFVGSLLWVDYARWTGVQKIKE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
126	16	83			0.994512
127	16	83			0.994512
130		83		16	0.994512
222	14		85		0.993533
224		85		14	0.993533
358	33		66		0.997452
361	66			33	0.997452
530	33		66		0.997452
1048	33	66			0.997452
1050			66	33	0.997452
1051	66		33		0.997452
1150	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
22	33	ACA ACA ACA ACA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain