SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3674

Length: 601 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3674 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8618	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Flavonoid 3'5'-hydroxylase n=1 Tax=Phalaenopsis hybrid cultivar RepID=Q3YAF0_9ASPA	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	cytochrome p450	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	flavonoid biosynthetic process	GO:0009813	Biological Process	64%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	64%
Blast2go	coumarin biosynthetic process	GO:0009805	Biological Process	64%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	64%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	64%
Blast2go	heme binding	GO:0020037	Molecular Function	64%
Blast2go	p-coumarate 3-hydroxylase activity	GO:0046409	Molecular Function	64%
Blast2go	microsome	GO:0005792	Cellular Component	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	64%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	64%
Blast2go	mitochondrion	GO:0005739	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
230	33	66			0.997452
231	33	66			0.997452
233		66	33		0.997452
234			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain