SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3626

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene3626
AATGTTGCTAGTGCAGGACTGCGCTCTCTCTTTGGATTTCAAACTTCAAGGCATTTGTCACTTCATTCGACAGGAACTCTTGGGCTATCAGTATCTCTAAAAGATGGTTCTGTCAATCTGTCAAACACATGGACTCGCCAATTATCAGAAGTATCAAGTGGAAATATACAGCTTGTATTAGGAACAGATCCAACAATAGCTGTTGGATGGCAAAGAAAAGATGAAAAGAATTCAGCAGCAGGCGAGTTGAAGTTTGGACCAACTATTTTTGGAGCTTCAGGACACTACACTCATCATTTTTCATCAAAATCTCATGGTCGAATCGGAGGCAGGATTGGAAGCACTGCCCTTGAGTTTGAGGTTGGAGGTGGGAGAAGAATATCAGGTTAGTAATCACAGAAGCCGTCT

Ace file of the UniGene biog3_v1.0_unigene3626

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2792	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone protein dnaJ, putative n=1 Tax=Ricinus communis RepID=B9SSF5_RICCO	-	-	60%
FL-Next	sp=Chaperone protein dnaJ 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	chaperone protein dnaj 13	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	76%
Blast2go	response to high light intensity	GO:0009644	Biological Process	76%
Blast2go	response to very low light intensity stimulus	GO:0055122	Biological Process	76%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	76%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	76%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	76%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39079

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 206 aas, your sequence is shorter than subject: 130 - 538

Fln protein: NVASAGLRSLFGFQTSRHLSLHSTGTLGLSVSLKDGSVNLSNTWTRQLSEVSSGNIQLVLGTDPTIAVGWQRKDEKNSAAGELKFGPTIFGASGHYTHHFSSKSHGRIGGRIGSTALEFEVGGGRRISG*

Protein Length: 131

Fln nts: AATGTTGCTAGTGCAGGACTGCGCTCTCTCTTTGGATTTCAAACTTCAAGGCATTTGTCACTTCATTCGACAGGAACTCTTGGGCTATCAGTATCTCTAAAAGATGGTTCTGTCAATCTGTCAAACACATGGACTCGCCAATTATCAGAAGTATCAAGTGGAAATATACAGCTTGTATTAGGAACAGATCCAACAATAGCTGTTGGATGGCAAAGAAAAGATGAAAAGAATTCAGCAGCAGGCGAGTTGAAGTTTGGACCAACTATTTTTGGAGCTTCAGGACACTACACTCATCATTTTTCATCAAAATCTCATGGTCGAATCGGAGGCAGGATTGGAAGCACTGCCCTTGAGTTTGAGGTTGGAGGTGGGAGAAGAATATCAGGTTAGTAATCACAGAAGCCGTCT

Fln Alignment:

Contig3626___VASAGLRSLFGFQTSRXXXXXXXXXXXXXXXXKDGSVNLSNTWTRQLSEVSSGNIQLVLGTDPTIAVGWQRKDEKNSAAGELKFGPTIFGASGHYTHHFSSKSHGRIGGRIGSTALEFEV
Q39079_________________VASTGLQSLIGVQTTRQLTIHSTATINISKSLSDGSINLTNTWTRQLSETSSGNIELALGMRSAITVGWKKRDENVSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain