SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3535

Length: 204 nt

UniGene Fasta

>biog3_v1.0_unigene3535
AATGTCATCCTATAGTCCTGAATTGTGGCCATGTGTTTTGTCAATCATGCATTAAGATCTCTGAAGAGAGAACTCTTAACTGCCAAGTTTGTCAATGGATACACCCTGGAGATCGACCATCTGTTTGTTTGAAGTTGGACCAGTTCTTGGAGCAAAGATTTCCTGTAGAATATGCTGAAAGGAAAACGTCAGTTCTTGTCCAAG

Ace file of the UniGene biog3_v1.0_unigene3535

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26123	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin-protein ligase PRT1 [Arabidopsis thaliana] sp\|Q8LBL5.2\|PRT1_ARATH RecName: Full=E3 ubiquitin-protein ligase PRT1; AltName: Full=Proteolysis 1 protein emb\|CAA11891.1\| PRT1 [Arabidopsis thaliana] emb\|CAA11892.1\| PRT1 [Arabidopsis thaliana] dbj\|	-	-	36%
FL-Next	sp=E3 ubiquitin-protein ligase PRT1; Arabidopsis thaliana (Mouse-ear cress).	-	-	45%
Blast2go	e3 ubiquitin-protein ligase prt1	-	-	51%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LBL5

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 67 - 410

Fln protein: CHPIVLNCGHVFCQSCIKISEERTLNCQVCQWIHPGDRPSVCLKLDQFLEQRFPVEYAERKTSVLVQ

Protein Length: 68

Fln nts: AATGTCATCCTATAGTCCTGAATTGTGGCCATGTGTTTTGTCAATCATGCATTAAGATCTCTGAAGAGAGAACTCTTAACTGCCAAGTTTGTCAATGGATACACCCTGGAGATCGACCATCTGTTTGTTTGAAGTTGGACCAGTTCTTGGAGCAAAGATTTCCTGTAGAATATGCTGAAAGGAAAACGTCAGTTCTTGTCCAAG

Fln Alignment:

Contig3535___PIVLNCGHVFCQSCI--KISEERTLNCQVCQWIHPGDRPSVCLKLDQFLEQRFPVEYAERKTSV
Q8LBL5_________________PVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCLILEQLLEENFPEEYNSRSSKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain