SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3516

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene3516
GATGTGGCTGCGGCTTTGGAGTACCTTCATTTTTATTGTGATCCACCTTTATGTCACAGAGACATTAAATCGAGTAATATTTTGCTGGACGAGAACTTTGTTGCTAAGGTATCTGATTTTGGTCTTGCTCATGCTGCACCTTGTGGTGCCAGCAATTTTGAACCAGTTAATACAGATGTTCGTGGAACCCCAGGATACATGGACCCAGAGTACCTTGTCACTCAAGAGTTAACAGAAAAAAGTGATGTATATAGCTATGGTGTGTTACTTCTT

Ace file of the UniGene biog3_v1.0_unigene3516

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6785	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] dbj\|BAB02454.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAU94380.1\| At3g19300 [Arabidopsis thaliana] gb\|AAV59270.1\| At3g19300 [Arabidopsis thaliana] gb\|AEE76221.1\| protein kinase family protei	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	probable receptor-like protein kinase at1g49730-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 91 - 611

Fln protein: DVAAALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVSDFGLAHAAPCGASNFEPVNTDVRGTPGYMDPEYLVTQELTEKSDVYSYGVLLL

Protein Length: 92

Fln nts: GATGTGGCTGCGGCTTTGGAGTACCTTCATTTTTATTGTGATCCACCTTTATGTCACAGAGACATTAAATCGAGTAATATTTTGCTGGACGAGAACTTTGTTGCTAAGGTATCTGATTTTGGTCTTGCTCATGCTGCACCTTGTGGTGCCAGCAATTTTGAACCAGTTAATACAGATGTTCGTGGAACCCCAGGATACATGGACCCAGAGTACCTTGTCACTCAAGAGTTAACAGAAAAAAGTGATGTATATAGCTATGGTGTGTTACTTCTT

Fln Alignment:

Contig3516___VAAALEYLHFYCDPPLCHRDIKSSNILLDENFVAKVSDFGLAHAAPCGASNFEPVNTDVRGTPGYMDPEYLVTQELTEKSDVYSYGVLLL
B8LPC1_________________MARGLAYLHHEIQPGIIHRDIKASNILLDENFNARVADFGLAKFAPEGVSH---LSTRVAGTLGYVAPEYALYGQLTEKSDVYSFGVVLL

SNPs (tot: 4)

Position	A %	C %	T %	Probability
229	25		75	0.996473
230		25	75	0.996473
232	75		25	0.996473
233		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain