SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3440

Length: 427 nt

UniGene Fasta

>biog3_v1.0_unigene3440
AATGTATTCATACCATTTGCTGAACATCATCAGTTGCATTCATTTTTAGTTCTATTGATGCTATACTACCAGCTCTATCTTCTAATTCAATGAGAGATGGACCACTTACGGGGATTGCAATATCTCTTCTTGCTCGTGCATGCCTCTATTCTCCAGTGGAGGATATTAATATTATACCTCCAAGTGTATGGAACAATCTGGAAGTCTTGGCAACATCTAAGAATGGAGGTGCATTCATTCAGGCACAGAAAGCTGTTTGTCGGGCTTTATTGCAGCTCAAGGAGCACACGGATGAAGCCTAAGGAGGTTCTTAAGGAAGCATTGATGAGGAGTTCAGAAAGTGCACAACTGAATCCAGATCTTGCAGATGTCCGCGAATCAGTCCTTCAGGTTCTGGCAAGGCTCAATTCTATTCGGTCAAAATTTG

Ace file of the UniGene biog3_v1.0_unigene3440

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25285	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin_tail_1 multi-domain protein	-	-	7.0e-06	24%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	49%
Blast2go	uncharacterized protein loc100252352	-	-	4.2039e-45	62%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SNF2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 379 aas, your sequence is shorter than subject: 100 - 2277

Fln protein: CIHTIC*TSSVAFIFSSIDAILPALSSNSMRDGPLTGIAISLLARACLYSPVEDINIIPPSVWNNLEVLATSKNGGAFIQAQKAVCRALLQLKEHTDEA*

Protein Length: 101

Fln nts: AATGTATTCATACCATTTGCTGAACATCATCAGTTGCATTCATTTTTAGTTCTATTGATGCTATACTACCAGCTCTATCTTCTAATTCAATGAGAGATGGACCACTTACGGGGATTGCAATATCTCTTCTTGCTCGTGCATGCCTCTATTCTCCAGTGGAGGATATTAATATTATACCTCCAAGTGTATGGAACAATCTGGAAGTCTTGGCAACATCTAAGAATGGAGGTGCATTCATTCAGGCACAGAAAGCTGTTTGTCGGGCTTTATTGCAGCTCAAGGAGCACACGGATGAAGCCTAAGGAGGTTCTTAAGGAAGCATTGATGAGGAGTTCAGAAAGTGCACAACTGAATCCAGATCTTGCAGATGTCCGCGAATCAGTCCTTCAGGTTCTGGCAAGGCTCAATTCTATTCGGTCAAAATTTG

Fln Alignment:

Contig3440___RDGPLTGIAISLLARACLYSPVEDINIIPPSVWNNLEVLATSKNGGAFIQAQKAVCRALLQLKEHTDEA
A9SNF2_________________KSGPLTHTGLSLLARVCLYSKTPDYEIIPSRVWNSIEALALSKSGGKFLDKEREICQALVQLRNEEENA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain