SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3426

Length: 1544 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3426

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7401	44/45

Source	Descriptions	Term	Type	Identity
AutoFact	RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] sp\|Q9C578.1\|RCL1_ARATH RecName: Full=Probable RNA 3'-terminal phosphate cyclase-like protein emb\|CAC34503.1\| RNA 3'-terminal phosphate cyclase-like protein [Arabidopsis thaliana] gb\|AAN	-	-	62%
FL-Next	sp=Probable RNA 3'-terminal phosphate cyclase-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-3'-phosphate cyclase.	EC:6.5.1.4	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	79%
Blast2go	RNA-3'-phosphate cyclase activity	GO:0003963	Molecular Function	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	RNA 3'-terminal phosphate cyclase	IPR000228	-	-
Sma3	RNA 3'-terminal phosphate cyclase, insert domain	IPR013796	-	-
Sma3	RNA 3'-terminal phosphate cyclase type 2	IPR016443	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C578

Fln msg:

Fln protein: MVKASTLQMHGTQHFRQRLVLSTLSGTAVRIEDIRADDTSPGLRNYEVSFLRLMEKVSDGCVVEINETGTKLRFKPGLLVGGKQLNHDCGLSRSIGYFLEPLIVLGLFGKKPLSITLKGITNDNKDPCVDTFRTTTLPMLKHFGIPLEDLELKIVSRGAPPNGGGEVRLKVPIVQNSLTAVTWVDEGMVKRIRGVAYSTRVSPQMSNRMVDASRGILNRLLPDVYIFTDHYSGQLSGRSPGYGISLVAETTSGCLISAECAANYTANEEEGDVSDAKNQKAPILPEDIGSRGAMMLLEEIKQGGVVDSTHQGLLFLLCALCPEDVSKVRVGKLSTYGIKTLRHIKDFLGVQFNIKPDPTTGTVILTCVGCGYKNFARKVS*

Protein Length: 382

Fln nts: AATGTGTTCATCGCCAAGGAGAAAAATCACCGGCAGTTGATGTCACTCCTTAGGGGTAATAATGGTTAGAGGCAATAACAACTTCCTCAGCGGTATCAGCCATAATTTTCTGGATTGAACCCCACCTTGCTACTTGGTGTTTAGCTGTTGGCTTCATACTACTCGGCTGGTAGCAGGTTTTGATGAACTTTCTAACCTACTGAAATCAAGGAGTTCTAGATCAGGATTCAAGGAACATCGGCTTAGGTGAAT_-_ATGGTGAAAGCGTCTACCTTACAGATGCATGGCACACAACATTTTCGTCAGCGCCTTGTATTGTCTACATTGTCTGGCACTGCAGTGCGTATTGAAGATATCCGAGCAGATGACACATCACCTGGTTTGCGAAATTATGAGGTCTCCTTTCTCCGCCTAATGGAGAAAGTAAGTGATGGTTGTGTTGTGGAGATCAATGAAACAGGGACAAAGCTAAGATTTAAGCCTGGTTTGCTTGTTGGTGGAAAACAACTGAACCATGATTGTGGCCTAAGTAGATCAATAGGTTACTTCTTGGAGCCTTTGATTGTTTTGGGGCTCTTTGGCAAGAAACCTCTTTCTATTACGCTTAAAGGAATTACAAATGATAATAAGGACCCTTGTGTTGATACTTTTCGAACAACTACGTTGCCTATGCTAAAGCATTTTGGCATTCCCTTAGAGGACTTAGAACTGAAAATTGTTAGTCGAGGGGCGCCTCCTAATGGAGGTGGAGAAGTGCGTCTGAAGGTTCCTATTGTGCAAAATAGTTTGACAGCTGTCACATGGGTCGATGAGGGTATGGTGAAAAGAATCAGGGGAGTGGCTTATTCAACTAGAGTATCGCCGCAAATGTCTAATCGCATGGTAGATGCTTCTCGTGGCATTCTTAATCGACTCTTACCAGATGTCTATATTTTCACTGATCATTACTCAGGTCAACTTTCAGGGAGATCTCCAGGTTATGGCATCTCTTTAGTGGCTGAGACCACAAGTGGTTGCCTGATATCTGCTGAGTGTGCTGCTAATTATACTGCAAATGAAGAGGAGGGGGATGTTTCTGATGCCAAGAATCAGAAAGCACCAATTCTTCCAGAAGATATTGGCTCACGAGGTGCAATGATGCTCCTTGAAGAAATCAAACAGGGTGGAGTGGTTGATTCAACACACCAGGGTCTACTATTTCTTCTTTGCGCTTTATGTCCAGAGGATGTTTCAAAGGTTCGTGTTGGGAAACTTTCCACTTATGGCATAAAGACCTTACGGCATATCAAGGATTTCCTTGGTGTTCAGTTTAATATCAAACCAGATCCGACAACAGGCACTGTAATTTTGACGTGTGTTGGTTGTGGTTACAAGAATTTTGCACGGAAAGTTTCTTAA___GTTCAGACTACAGTATTGCTGGATGGTGAAGTCAGCATATTAGGTTGTGTACTGAACATTTTTTTGTCTCAGAAAAGGTTAATATTTACATCTGATGGTTATTGGTGAACCTTTACATCTGATGGGTATTGGAAAGCATTTACTACATT

Fln Alignment:

Contig3426___QMHGTQHFRQRLVLSTLSGTAVRIEDIRADDTSPGLRNYEVSFLRLMEKVSDGCVVEINETGTKLRFKPGLLVGGKQLNHDCGLSRSIGYFLEPLIVLGLFGKKPLSITLKGITNDNKDPCVDTFRTTTLPMLKHFGIPLEDLELKIVSRGAPPNGGGEVRLKVPIVQNSLTAVTWVDEGMVKRIRGVAYSTRVSPQMSNRMVDASRGILNRLLPDVYIFTDHYSGQLSGRSPGYGISLVAETTSGCLISAECAANYTANEEEGDVSDAKNQKAPILPEDIGSRGAMMLLEEIKQGGVVDSTHQGLLFLLCALCPEDVSKVRVGKLSTYGIKTLRHIKDFLGVQFNIKPDPTTGTVILTCVGCGYKNFARKVS
Q9C578_________________KMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDINETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPRDASVDTFRSTTLNIIKRFGVPAEDLELKIEARGVAPNGGGEVLLTVPNIK-TLSAVHWVEEGMVKKIRGTTFSTRVTSDFEHSMRFAARGIFNNLLPDVHIFQDHRAGAQAGKSPGYGISLAAETTTGCFISADTTVSCERPDETGELDVEKKERSP--AEDTGVEVASWLLQEIEKGGVVDSTHQGLLFLLCALSEQDVSKVRVGTLSPYAVETLRNIKEFLGVKFAIKPDPLTGTVILKCTGSGLINLSRKLS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
96	33			66	0.997452
97		66		33	0.997452
98	66		33		0.997452
99			66	33	0.997452
512		80		20	0.995493
513		80	20		0.995493
514	80			20	0.995493
562	16			83	0.994512
673		10		90	0.90298
710			90	10	0.90298
823	87	12			0.992554
825	87			12	0.992554
826			87	12	0.992554
925	11			88	0.923564
930	22			11	0.999999
932		25		75	1.0
933	25			75	1.0
1054	62	37			1.0
1057			71	28	1.0
1261		12		87	0.992554
1264			87	12	0.992554
1337	12		87		0.992554
1340		87		12	0.992554
1404		16	83		0.994512
1406		83		16	0.994512
1444	20		80		0.995493
1445	20	20		60	0.99255
1446	20	20		60	0.99255
1447	25		50	25	0.995533
1449			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain