SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3420

Length: 454 nt

UniGene Fasta

>biog3_v1.0_unigene3420
ATTCACGGGGCAGATCATTACATAGATCAGATTGCTCAGATGGTTCCTGATGTGGCTTGGGGTGTTCATACCAGGGTTGTTTTGGATGTGGGATGTGGTGTAGCAAGCTTTGGTGCCTTTTTGCTTTCTCGAAATGTATCAACACTTTCCATAGCTCCAAAAGATGTTCATGAAAATCAGATCCAGTTTGCTCTTGAACGTGGTGTTCCTGCTATGGTGGCAGCTTTTGCAACACACCGCCTTTTGTATCCCAGTCAGGCTTTTGACATGATTCACTGTTCGCGCTGTCGAATTGAATGGACTAATGATGGGGGTATTTTACTTCTTGAAGTGGATAGGATGTTGAGGGCTGGAGGCTACTTTGCTTGGGCAGCACAGCCAGTATACAAACATGAGGAGAAGCTACAAGAAGCTTGGAAAGATATGGAGAACCTTACCACAAGGATGTGCTGGA

Ace file of the UniGene biog3_v1.0_unigene3420

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15124	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT11 [Arabidopsis thaliana] sp\|O22285.1\|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gb\|AAB87124.1\| expressed protein [Arabidopsis thaliana] gb\|AAK96646.1\| At2g39750/T5I7.5 [Arabidopsis thaliana] gb\|AAM70566.1\| At2	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	probable methyltransferase pmt11-like	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 151 - 637

Fln protein: IHGADHYIDQIAQMVPDVAWGVHTRVVLDVGCGVASFGAFLLSRNVSTLSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFDMIHCSRCRIEWTNDGGILLLEVDRMLRAGGYFAWAAQPVYKHEEKLQEAWKDMENLTTRMCW

Protein Length: 152

Fln nts: ATTCACGGGGCAGATCATTACATAGATCAGATTGCTCAGATGGTTCCTGATGTGGCTTGGGGTGTTCATACCAGGGTTGTTTTGGATGTGGGATGTGGTGTAGCAAGCTTTGGTGCCTTTTTGCTTTCTCGAAATGTATCAACACTTTCCATAGCTCCAAAAGATGTTCATGAAAATCAGATCCAGTTTGCTCTTGAACGTGGTGTTCCTGCTATGGTGGCAGCTTTTGCAACACACCGCCTTTTGTATCCCAGTCAGGCTTTTGACATGATTCACTGTTCGCGCTGTCGAATTGAATGGACTAATGATGGGGGTATTTTACTTCTTGAAGTGGATAGGATGTTGAGGGCTGGAGGCTACTTTGCTTGGGCAGCACAGCCAGTATACAAACATGAGGAGAAGCTACAAGAAGCTTGGAAAGATATGGAGAACCTTACCACAAGGATGTGCTGGA

Fln Alignment:

Contig3420___HGADHYIDQIAQMVP----DVAWGVHTRVVLDVGCGVASFGAFLLSRNVSTLSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFDMIHCSRCRIEWTNDGGILLLEVDRMLRAGGYFAWAAQPVYKHEEKLQEAWKDMENLTTRMCW
B8LKS3_________________NGADKYIAALADMLKISGGNLSNGGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYMQDEENLQIWNAMSDLVKRMCW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
283		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain