SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3389

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3389
GTGAACGCAAATCCGCTGTAATATCGGATGAATCCAGACGCTTAACTGCTTATCACGAGGGAGGTCATGCGCTTGTGGCAATTCATACAGATGGTGCTCTTCCTGTACATAAAGCTACAATTGTTCCAAGAGGAATGTCTCTTGGAATGGTTTCACAGCTTCCTGATAAGGACGAGACTAGTATTTCTCGTAAACAGATGCTAGCACGTTTAGACGTCTGTATGGGTGGAAGAGTTGCAGAAGAGCTGATTTTTGGAGAGAGTGAGGTGACATCTGGGGCTTCTTCGGATATCCAGCAGGCGACATCAATTGCCAGAGCTATGGTAACAAAATATGGAATGAGCAAAGCTGTAGGCCTTGTAACACATAACTACGATGACAATGGGAAGAGCATGAGCACAGAGACACGACAACTTATTGAGAACGAAGTAAGAGATTTTCTGGAAAGAGCTTATGGAAATGCAAAAGCCATTTTGACCACAC

Ace file of the UniGene biog3_v1.0_unigene3389 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2969	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to ftsH-like protease n=1 Tax=Vitis vinifera RepID=UPI0001982E96	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	atp-dependent zinc metalloprotease ftsh mitochondrial-like	-	-	85%

Source	ECs	Term	Type	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	85%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	85%
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	proteolysis	GO:0006508	Biological Process	85%
Blast2go	protein catabolic process	GO:0030163	Biological Process	85%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	85%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	85%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3		IPR001984	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQE3

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 160 - 264

Fln protein: ERKSAVISDESRRLTAYHEGGHALVAIHTDGALPVHKATIVPRGMSLGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDIQQATSIARAMVTKYGMSKAVGLVTHNYDDNGKSMSTETRQLIENEVRDFLERAYGNAKAILTT

Protein Length: 161

Fln nts: GTGAACGCAAATCCGCTGTAATATCGGATGAATCCAGACGCTTAACTGCTTATCACGAGGGAGGTCATGCGCTTGTGGCAATTCATACAGATGGTGCTCTTCCTGTACATAAAGCTACAATTGTTCCAAGAGGAATGTCTCTTGGAATGGTTTCACAGCTTCCTGATAAGGACGAGACTAGTATTTCTCGTAAACAGATGCTAGCACGTTTAGACGTCTGTATGGGTGGAAGAGTTGCAGAAGAGCTGATTTTTGGAGAGAGTGAGGTGACATCTGGGGCTTCTTCGGATATCCAGCAGGCGACATCAATTGCCAGAGCTATGGTAACAAAATATGGAATGAGCAAAGCTGTAGGCCTTGTAACACATAACTACGATGACAATGGGAAGAGCATGAGCACAGAGACACGACAACTTATTGAGAACGAAGTAAGAGATTTTCTGGAAAGAGCTTATGGAAATGCAAAAGCCATTTTGACCACAC

Fln Alignment:

Contig3389___SAVISDESRRLTAYHEGGHALVAIHTDGALPVHKATIVPRGMSLGMVSQLPDKDETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDIQQATSIARAMVTKYGMSK-----AVGLVTHNYD-----DNGKSMSTETRQLIENEVRDFLERAYGNAKA
A9NQE3_________________TAMTDGKSKSLVAYHEVGHAICATLTPGHDPVQKITLLPRGQARGLTWFLPGQDPSLISKGQIFARIVGALGGRAAEEIVFGETEVTSGAASDLQQVTQIARQMVTAFGMSEIGPWALMDPVVQSSDVVLRMMARNSMSEKLLEDIDKTVKSITDKAYDMAKS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
224	20			80	0.995493
225		80		20	0.995493
323		25	75		0.996473
325	75			25	0.996473
326			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain