SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3349

Length: 503 nt

UniGene Fasta

>biog3_v1.0_unigene3349
AATGTGGATGTGAAGGCTGCTAACGTCCTATTGGATGATGTGTTTGAAGCTGTGGTGGGAGATTTTGGTTTAGCCAAACTTATGGATTACAAGGATACTCATGTGACTACAAATGTCTGTGGTACAATTGGACACATAGCACCGGAATACCTTTCTACTGGAAAGTCTTCAGAAAAGACTGATGTATTTGCATATGGGATTATGTTGCTGGAAATTATCACAGGACAGAGGGCATTTGACCTTGCACGATTAGCAAGTGACGATGATATCATGCTTCTTGACTGGGTTAAAGGGATGCTAAGAGAGAGGAGGCTGGATAGGCTGGTTGATCCAGAACTCCAGAACAATTATGAGGAAACAGAGGTGGAGCAACTTATTCAAGTTGCCTTACTTTGCACCCAAAATTCACCAATGGAAAGACCAAAGATGGCCGATGTGGTACGGATGCTAGAAGGTGATGGCTTAGCTGAAAGATGGGATGAATGGACAAAAGGTGGAGGTAA

Ace file of the UniGene biog3_v1.0_unigene3349

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31095	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Somatic embryogenesis receptor-like kinase 1 n=2 Tax=Coniferales RepID=D1MEH6_9CONI	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	somatic embryogenesis receptor kinase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Adenovirus E3 region protein CR2	IPR003470	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ80

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 140 - 172

Fln protein: MDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWTKGGG

Protein Length: 141

Fln nts: AATGTGGATGTGAAGGCTGCTAACGTCCTATTGGATGATGTGTTTGAAGCTGTGGTGGGAGATTTTGGTTTAGCCAAACTT_-_ATGGATTACAAGGATACTCATGTGACTACAAATGTCTGTGGTACAATTGGACACATAGCACCGGAATACCTTTCTACTGGAAAGTCTTCAGAAAAGACTGATGTATTTGCATATGGGATTATGTTGCTGGAAATTATCACAGGACAGAGGGCATTTGACCTTGCACGATTAGCAAGTGACGATGATATCATGCTTCTTGACTGGGTTAAAGGGATGCTAAGAGAGAGGAGGCTGGATAGGCTGGTTGATCCAGAACTCCAGAACAATTATGAGGAAACAGAGGTGGAGCAACTTATTCAAGTTGCCTTACTTTGCACCCAAAATTCACCAATGGAAAGACCAAAGATGGCCGATGTGGTACGGATGCTAGAAGGTGATGGCTTAGCTGAAAGATGGGATGAATGGACAAAAGGTGGAGGTAA

Fln Alignment:

Contig3349___MDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQNNYEETEVEQLIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWTK
A9NZ80_________________MDYKDTHVTTNVCGTIGHIAPEYLSTGKSSEKTDVFAYGIMLLEIITGQRAFDLARLASDDDIMLLDWVKGMLRERRLDRLVDPELQSNYEETEVEELIQVALLCTQNSPMERPKMADVVRMLEGDGLAERWDEWQK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
180	20		80		0.995493
181	80			20	0.995493
182		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain