SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3333

Length: 1782 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3333

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21253	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	lupus la	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Lupus La protein	IPR002344	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9L9

Fln msg:

Fln protein: MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCSENSNASTEASSSSSSAALEKSLLSYSSSSSSALFEKSSSSSKLNAEAPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIHSSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNERNGGRKGRGRGRGKPRGRGQYHGNGRGHPVGLASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV*

Protein Length: 472

Fln nts: CGAACCGTCAGGGCGGAGGAAAAAGCCCAGCAGCTTCCGCGGGTCCTGGGTTCGATTCCTGCGGACTGCCTAATAAATGCAGTAGACATCTCGCGGGCACGTCTGAGGCAGCTGAGGTTTATTTGCACAGAATCC_-_ATGGCGGAGCCAGGGGGAGACGACTCCAAAACCTCTGAAAATCAACCCTCCATTGATACGGAACCCATGGAAATCCATGGAGAAGTTTCTTCGGTCGAAACCCCAATGGACGACGGTCTCCTAGGGAAATGTTCTGAGAACTCCAACGCGAGCACAGAGGCGTCGTCGTCCTCTTCGTCGGCTGCTCTTGAAAAAAGTTTGTTGTCGTATTCGTCTTCGTCTTCGTCGGCTCTTTTTGAGAAAAGCTCGTCGTCGAGCAAGCTTAACGCCGAAGCTCCCGTGTTTGTTCCCAGAGCGCAAGCTGCCGTTCACGTCGGAGGACCGATTTTGCCAGGCTTTACTGAACGTCCACTGCCAGAGCAGTTTTTTGAGCAGGAGGTCTTGGCGTCCGAGGCGGAGAGTGCGGCTGGCCCCATTCATTCCTCAAAGGCCGTCCTCACCGAGGAATTGAAACAAAAGGTCGTTCAGCAGGTTGAGTTCTATTTTAGTGATTCAAATCTGCCCACTGACAAATATTTGATGAAGTTTGTGAAGAAGGATCCAGAAGGATTTGTTCCTATTCCGGTTGTGGCATCTTTCAGGAAAGTAAAAAGCCTTGTTAGCAATCATTCTTTGGTGGCAGCTGCATTGAGGACATCTTCACAACTGGTTGTTAGTGAAGATGGGAAGAAAGTGAGGAGACTTCACCCGTTGACAGATATTGACATCGAGGAGGTGCAGTCCCGCACTGTTGTTGCAGAAAATCTGCCCAGTGATTATTCTATCCAAAATCTGGAGAAACTTTTTGGTGCTGTTGGCAGTGTAAAACTTGTGCGTGTTTTCCAACCTCAAAGGTATGATTCGGGCCAAGTTTCAATGAAGGCCCACAGGAATGATATGTTTGTCAGCAGCAAGCTGCACGCACTTGTGGAGTATGAGACTGTTGAACAAGCTGAGAAAGCTGTTGCTGATCTAAATGATGGAGGAAACTGGAGAAGTGGCCTTCGAGTGCAACTGCTTTTAAAGCGGATGGGTAAGTATGGACACCCAACAAAAGGACGGCAATTGGATAATGCTGATGGACATGGACATGGTGAAGAGGAAGATGTGAACAACACATCTGACACAGGAAATGATAAACAATCGAAAGTTACTGCACAACATTCAGACCGACATGATGAGTTAGAGGGAGACGCACATCACCAAAATGAAAGAAATGGAGGAAGAAAAGGCAGGGGAAGGGGACGAGGGAAGCCTCGTGGCCGTGGGCAGTATCATGGTAATGGGCGTGGCCATCCAGTTGGCTTAGCATCAACTAGCAGTTCTAGTAGCGGTGAAGTTGTGGTCAAGCAACCTCCAGGACCAAGAATGCCAGATGGAACCCGGGGCTTTACCATGGGTCGTGGTAGACCACTCGCTGACAGTAATGTTTAG___AACCATTTTTCGTAGATGAGCTTTTGGGGCATGGAAATCTGTGATTTCTCTACTGTGAACTGTTTTTATTGTTTGCACCTTAGAGATGCTACTGAGTTTTCCAGTTTACAGCTCATCATTGTTTTGTTCTTATTTAATCGAAGATACTATTTTGATAGAGGCTTTGTTGGTGGGGCTATCTAGTTGTCTCCTCTTTCAAAGaGGAGGCTTCTTAGCAGAAAGAATATTGACATT

Fln Alignment:

Contig3333___MAEPGGDDSKTSENQPSIDTEPMEIHGEVSSVETPMDDGLLGKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVFVPRAQAAVHVGGPILPGFTERPLPEQFFEQEVLASEAESAAGPIH--SSKAVLTEELKQKVVQQVEFYFSDSNLPTDKYLMKFVKKDPEGFVPIPVVASFRKVKSLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLTDIDIEEVQSRTVVAENLPSDYSIQNLEKLFGAVGSVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLRVQLLLKRMGKYGHPTKGRQLDNADGHGHGEEEDVNNTSDTGNDKQSKVTAQHSDRHDELEGDAHHQNEXXXXXXXXXXXXXXXXXXXQYHGNGRGHPVGLAXXXXXXXGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV
D5A9L9_________________MAEPVRDDSKTSENQPSVDTEPMEIHGEISSVETPVDDGLKSS-----ENLNASAEASVSSSAALEKSSLSYSSSSALLEKNSSSSKLNAQAPVFVPRAQVAVHVGGLIPSSFTEHSLPEQFIEQEVVGSEPESAATPTPTPSSKAVLTEELRQKVVKQVEFYFSDANLPTDKYLMKFVKKDPEGFVPIPFLANFRKVKNLVSNHSLVAAALRTSSQLVVSEDGKKVRRLHPLADTDIEEVQSRTVVAENLPNDYSIQNLEKRFGAVGNVKLVRVFQPQRYDSGQVSMKAHRNDMFVSSKLHALVEYETVEQAEKAVADLNDGGNWRSGLQVQLLLKRMGKYGHQTKGRQSDNAD--VHGEEEDANNTSDTGNDKQSKVTTQHSDRHDDFEGDAHYPNEKNGGRKGRGRGRGKPRGRGQYHGNGRGHPLNTASTSSSSSGEVVVKQPPGPRMPDGTRGFTMGRGRPLADSNV

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
589	16		83		0.994512
590	83	16			0.994512
592	83			16	0.994512
593		83		16	0.994512
643	20	80			0.995493
645		80		20	0.995493
764	14		85		0.993533
799	83	16			0.994512
800	16		83		0.994512
801	83			16	0.994512
915			71	28	1.0
922	20	80			0.995493
923		20		20	0.99255
979		25		75	0.996473
1020	33			66	0.997452
1021		33	66		0.997452
1022	33			66	0.997452
1073			75	25	0.996473
1074		75	25		0.996473
1179			85	14	0.993533
1180			85	14	0.993533
1216	16		83		0.994512
1217		16		83	0.994512
1218	16		83		0.994512
1219	83			16	0.994512
1220	83			16	0.994512
1242		20		80	0.995493
1300	85			14	0.993533
1316		85		14	0.993533
1318		85		14	0.993533
1401	10		90		0.90298
1402		10	90		0.90298
1405	90			10	0.90298
1444			88	11	0.923564
1450		12	87		0.992554
1452	87			12	0.992554
1480	14	85			0.993533
1536	28	71			1.0
1539	28		71		1.0
1540		71		28	1.0
1552			75	25	0.996473
1559	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
345	362	TTCGTC TTCGTC TTCGTC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain