SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3240

Length: 408 nt

UniGene Fasta

>biog3_v1.0_unigene3240
AATGTTATCTACACTGAAACCGATGTACACAATTTTGGTCTAAAATTTTGCATGCGAGAGGTGCTTTTGGTGATCAATGCACCCTGGACAGAGTCAGGGAAGAGATTCTGGGTTATAATGATTTTTCATTGCATCAGTTATCTCTTTCCTATGGCGGTGTTGGATGTCGAGGAACACTTGATGACCGACATGCTTTATGCTCTGCAAAATGTCAGGCGCTGTCAAAACTCCTACCTGTATTGCACCGTGAGGGTCATCGTGCTTTAATTTTCAGTCAGTGGACAGCAATGCTTGATATTCTTGAATGGGCATTGGACACAATTGACATGACCTACAGACGATTAGATGGCAGCACTCAAGTCTCAGAGCGGCAAACCATTGTTGACACTTTCAACAATGATCCTACAA

Ace file of the UniGene biog3_v1.0_unigene3240

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1529	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb\|AAC97224.1\| putative helicase [Arabidopsis thaliana] gb\|AAL24339.1\| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana] gb\|AAO00936.1\| SNF2/RAD54 family (ETL1 subfamily) p	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	snf2 family dna-dependent atpase	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	helicase activity	GO:0004386	Molecular Function	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	transferase activity	GO:0016740	Molecular Function	79%
Blast2go	membrane	GO:0016020	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	HAS subgroup	IPR013999	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 185 aas, your sequence is shorter than subject: 135 - 377

Fln protein: CYLH*NRCTQFWSKILHARGAFGDQCTLDRVREEILGYNDFSLHQLSLSYGGVGCRGTLDDRHALCSAKCQALSKLLPVLHREGHRALIFSQWTAMLDILEWALDTIDMTYRRLDGSTQVSERQTIVDTFNNDPT

Protein Length: 136

Fln nts: AATGTTATCTACACTGAAACCGATGTACACAATTTTGGTCTAAAATTTTGCATGCGAGAGGTGCTTTTGGTGATCAATGCACCCTGGACAGAGTCAGGGAAGAGATTCTGGGTTATAATGATTTTTCATTGCATCAGTTATCTCTTTCCTATGGCGGTGTTGGATGTCGAGGAACACTTGATGACCGACATGCTTTATGCTCTGCAAAATGTCAGGCGCTGTCAAAACTCCTACCTGTATTGCACCGTGAGGGTCATCGTGCTTTAATTTTCAGTCAGTGGACAGCAATGCTTGATATTCTTGAATGGGCATTGGACACAATTGACATGACCTACAGACGATTAGATGGCAGCACTCAAGTCTCAGAGCGGCAAACCATTGTTGACACTTTCAACAATGATCCTACAA

Fln Alignment:

Contig3240___KCQALSKLLPVLHREGHRALIFSQWTAMLDILEWALDTIDMTYRRLDGSTQVSERQTIVDTFNN
D5AD70_________________KFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFND

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
291		83		16	0.994512
293		16		83	0.994512
297	80			20	0.995493
298			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain