SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3205

Length: 858 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene3205

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1218	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	nuclear protein x1	-	-	53%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	53%
Blast2go	protein binding	GO:0005515	Molecular Function	53%
Blast2go	nucleus	GO:0005634	Cellular Component	53%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Methyl-CpG DNA binding	IPR001739	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3		IPR009255	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: STOP codon was not found. Distance to subject end: 42 aas, your sequence is shorter than subject: 285 - 377

Fln protein: TPVDIVKLNIPDYFKVIKNPMDLGTIKRKLETDVYSNPREFAADVRLTFANAMTYNPPGNDVHIMAVQLNKIFEEKWRAIGIKLPEVDPNGRLSKAVQPVAAKQQQQQCQKKVAEKPKQNNQLKPASMSVDLNEKSVLRNGVMSIEENRSLAGILNPFQVICLSK*CNFFRKYSSGLSQNDCEIEVDIDEFDNETLFELRKIVNDCLNERNQSAAKNQLKVEPREAEAEPANGSRPGNNSSPLYSRKGGDPGDEDVDIGENDLPASNFPPVEIEKDAAGRSSKCS

Protein Length: 286

Fln nts: CACACCTGTTGATATTGTTAAGCTTAACATTCCCGACTATTTCAAGGTCATTAAGAACCCCATGGATTTGGGTACCATTAAGAGAAAGCTTGAAACGGACGTCTATTCAAACCCACGGGAGTTTGCTGCGGATGTTAGGCTGACATTTGCCAATGCAATGACATATAATCCACCTGGTAACGATGTCCACATTATGGCTGTTCAACTTAATAAGATTTTCGAAGAAAAATGGAGAGCTATTGGAATTAAGCTTCCTGAAGTGGATCCCAATGGGCGTTTAAGTAAGGCTGTACAGCCCGTTGCAGCAAAGCAGCAGCAGCAGCAATGCCAAAAGAAAGTTGCAGAGAAACCCAAGCAGAATAATCAGCTTAAGCCTGCTTCTATGTCAGTGGATCTGAATGAAAAGTCCGTGCTTCGCAATGGGGTAATGTCAATAGAGGAAAACAGAAGCTTAGCAGGGATCTTGAATCCGTTTCAGGTGATATGCCTGAGCAAATAATGCAATTTCTTCAGAAAGTATAGTTCTGGTCTGAGTCAGAATGACTGTGAGATTGAGGTTGATATTGATGAGTTTGACAATGAAACCCTGTTTGAATTGCGAAAAATTGTAAATGATTGTCTCAATGAAAGGAACCAAAGTGCAGCAAAAAATCAGCTGAAGGTTGAACCTCGTGAAGCTGAAGCTGAGCCTGCAAATGGGTCACGGCCAGGCAATAATAGCTCTCCACTGTATTCACGAAAAGGTGGTGATCCGGGAGATGAAGATGTAGACATTGGGGAGAATGACCTGCCTGCTTCAAATTTTCCTCCTGTAGAGATTGAGAAGGATGCAGCAGGTCGGAGCAGCAAATGTAGCAG

Fln Alignment:

Contig3205___TPVDIVKLNIPDYFKVIKNPMDLGTIKRKLETDV---YSNPREFAADVRLTFANAMTYNPPGNDVHIMAVQLNKIFEEKWRAIGIKLPEVDPNGRLSXXXXXXXXXXXXXXXXXXXXEKPKQNNQLKPASMSVD-LNEKSVLRNGVMSIEENRSLAGILNPFQVICLSK*CNFFRKYSSGLSQNDCEIEVDIDEFDNETLFELRKIVNDCLN-ERNQSAAKNQLKVEPRE
D5ABJ0_________________TPVDVKGLGLHDYHDVIKKPMDFGTIRRKMDAKDATGYKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKWKTLWPKVNEEE--ARRKKEEADANSREMVDSRLSGETDLEKLGGELDELNEHLEKLRQELAPKCRMMSVEEKRQLGESLGKLSPEDLTKALQIIAQKNPSFIPTEDEVELDIDAQDASTLWRLQYFVKAVLSVQAKTSIAKAQAKTKRKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
315			75	25	0.996473
316		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
309	324	AGC AGC AGC AGC AGC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain