SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3204

Length: 457 nt

UniGene Fasta

>biog3_v1.0_unigene3204
ATCCACAAATAGCAGCAAAGCAATTAACAGCGGAAGCTGTGAAACGAGAAAGCAAGGATGATATATCATGTATTGTAGTTCAGTTTAAATGATTGCTAGCTTGCTAAGGGACACGCACTTTTATCAGCATCAGATCCACATGGCGATTTGGATAGCAGCATATATTAAAAATGCTGGTCAGGAGTCCTGAGTGGCCTGGTGGATGCAATTTATGCCACTGTTTTATACCTAAAGCTAACAATGGTTTCAGTCTAGAAAAATGAGGCCTAGGAAAGCCTGAAAACCCATAATCTTTCAATATACCCACAATTTCTGTATGGTTATCGTCTTTTCTATATTGTAACAAAGTTCTCGAAACCTCCCTACAGATTGGTATTTTCTAGATTGTAACAATATGTACGTGCAACTTTGCTACAGATATGGAAATTGGAAATTTCCTTTTTGTATTATACAACCC

Ace file of the UniGene biog3_v1.0_unigene3204

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene672	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein phosphatase 2C-like [Medicago truncatula]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	probable protein phosphatase 2c 10-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	86%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	86%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV16

Fln msg: your sequence is shorter than subject: 30 - 298

Fln protein: PQIAAKQLTAEAVKRESKDDISCIVVQFK*

Protein Length: 31

Fln nts: ATCCACAAATAGCAGCAAAGCAATTAACAGCGGAAGCTGTGAAACGAGAAAGCAAGGATGATATATCATGTATTGTAGTTCAGTTTAAATGA___TTGCTAGCTTGCTAAGGGACACGCACTTTTATCAGCATCAGATCCACATGGCGATTTGGATAGCAGCATATATTAAAAATGCTGGTCAGGAGTCCTGAGTGGCCTGGTGGATGCAATTTATGCCACTGTTTTATACCTAAAGCTAACAATGGTTTCAGTCTAGAAAAATGAGGCCTAGGAAAGCCTGAAAACCCATAATCTTTCAATATACCCACAATTTCTGTATGGTTATCGTCTTTTCTATATTGTAACAAAGTTCTCGAAACCTCCCTACAGATTGGTATTTTCTAGATTGTAACAATATGTACGTGCAACTTTGCTACAGATATGGAAATTGGAAATTTCCTTTTTGTATTATACAACCC

Fln Alignment:

Contig3204___PQIAAKQLTAEAVKRESKDDISCIVVQF
A9NV16_________________PQVAAKQLTAEALNRESKDDISCVVVRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain