SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3193

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3193
AATGTTGGAATGCATAAGCCCGCTCAACAGACCATTGTTCCTGCTTCTTGTGTCCCAGAATTGCTTGCTTCTTTACCTGTGAAAAAAAATGAAGCAGCTAGGAGGCAAACTTGGTAGCTCTTTAGAAAATGATCTTGGTGTTAAAACAGTTGGAGACCTGTTGCAGTTTTCTGAATCAACACTGCAAGAGCGTTATGGTGTGAATACTGGGACATGGTTATGGAATATTGCAAGAGGAATCAGTGGAGATGAAGTTAAGGGTCGTCTCCTTCCCAAGAGTCAAGGCTGTGGAAAAACATTTCCAGGTCCTCGAGCTTTGAGGACTATTGCTTCTGTTGAACATTGGCTGGGTGAACTTTCCGCAGAGTTGAATGAACGCATACAAGCTGATTTAGAACAAAACAAACGCATTGCCCA

Ace file of the UniGene biog3_v1.0_unigene3193 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8439	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative translesion synthesis polymerase RAD30 [Arabidopsis thaliana]	-	-	43%
FL-Next	tr=Translesion synthesis DNA polymerase eta splice variant; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	dna polymerase eta	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	67%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	67%
Blast2go	Pyrimidine metabolism	00240	67%
Blast2go	Metabolic pathways	01100	67%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	67%
Blast2go	error-prone translesion synthesis	GO:0042276	Biological Process	67%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	67%
Blast2go	protein binding	GO:0005515	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	DNA polymerase eta	IPR017061	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A4ZYA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 83 aas, your sequence is shorter than subject: 138 - 442

Fln protein: MLECISPLNRPLFLLLVSQNCLLLYL*KKMKQLGGKLGSSLENDLGVKTVGDLLQFSESTLQERYGVNTGTWLWNIARGISGDEVKGRLLPKSQGCGKTFPGPRALRTIASVEHWLGELSAELNERIQADLEQNKRIA

Protein Length: 139

Fln nts: AATGTTGGAATGCATAAGCCCGCTCAACAGACCATTGTTCCTGCTTCTTGTGTCCCAGAATTGCTTGCTTCTTTACCTGTGAAAAAAAATGAAGCAGCTAGGAGGCAAACTTGGTAGCTCTTTAGAAAATGATCTTGGTGTTAAAACAGTTGGAGACCTGTTGCAGTTTTCTGAATCAACACTGCAAGAGCGTTATGGTGTGAATACTGGGACATGGTTATGGAATATTGCAAGAGGAATCAGTGGAGATGAAGTTAAGGGTCGTCTCCTTCCCAAGAGTCAAGGCTGTGGAAAAACATTTCCAGGTCCTCGAGCTTTGAGGACTATTGCTTCTGTTGAACATTGGCTGGGTGAACTTTCCGCAGAGTTGAATGAACGCATACAAGCTGATTTAGAACAAAACAAACGCATTGCCCA

Fln Alignment:

Contig3193___ENDLGVKTVGDLLQFSESTLQERYGVNTGTWLWNIARGISGDEVKGRLLPKSQGCGKTFPGPRALRTIASVEHWLGELSAELNERIQADLEQNKRIA
A4ZYA8_________________QTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
262		20	80		0.995493
263	20		80		0.995493
333	33			66	0.997452
334		33		66	0.997452
335	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain