SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3168

Length: 478 nt

UniGene Fasta

>biog3_v1.0_unigene3168
AATGTAGTTGGATGGGGATGTGGAGAACACATATGTTGAAAGGTACTCTCTAAGAGAGGCAGTAATTCTGATTTGTGCAACAAATCGGCCTGATGAACTAGAGGAGAGTTTTCTTCAACGTGGGCGCATAGATCGTGAACTCTATGTAGGTATGCCTGGAGAAAAGGAGCGTGTATCAATTTTTTCTGTTCACAGTAAAGGAAAACATTTAGCGAAGGATGTGGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGAGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTAAGGAAGGGTCACAATGAAATATGTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGTGTAGTCCTTACAGAGAAAGAGCAGCAAATGCATGAAAAAAATGTGACACTTGACAATAAAAGAGTGCTCGCAGTACATGAAGCTGGTCACATT

Ace file of the UniGene biog3_v1.0_unigene3168

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8649	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative FtsH protease [Arabidopsis thaliana]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cell division protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	75%
Blast2go	Microtubule-severing ATPase.	EC:3.6.4.3	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	cell division	GO:0051301	Biological Process	75%
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	75%
Blast2go	ATP-dependent peptidase activity	GO:0004176	Molecular Function	75%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	microtubule-severing ATPase activity	GO:0008568	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL95

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 235 aas, your sequence is shorter than subject: 159 - 1036

Fln protein: M*LDGDVENTYVERYSLREAVILICATNRPDELEESFLQRGRIDRELYVGMPGEKERVSIFSVHSKGKHLAKDVDFKKLVFRTIGYSGADIRNLVNESGIMAVRKGHNEICQQDIIDVLDKQLFESMGVVLTEKEQQMHEKNVTLDNKRVLAVHEAGHI

Protein Length: 160

Fln nts: AATGTAGTTGGATGGGGATGTGGAGAACACATATGTTGAAAGGTACTCTCTAAGAGAGGCAGTAATTCTGATTTGTGCAACAAATCGGCCTGATGAACTAGAGGAGAGTTTTCTTCAACGTGGGCGCATAGATCGTGAACTCTATGTAGGTATGCCTGGAGAAAAGGAGCGTGTATCAATTTTTTCTGTTCACAGTAAAGGAAAACATTTAGCGAAGGATGTGGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGAGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTAAGGAAGGGTCACAATGAAATATGTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGTGTAGTCCTTACAGAGAAAGAGCAGCAAATGCATGAAAAAAATGTGACACTTGACAATAAAAGAGTGCTCGCAGTACATGAAGCTGGTCACATT

Fln Alignment:

Contig3168___LDGDVENTYVERYSLREAVILICATNRPDELEESFLQRGRIDRELYVGMPGEKERVSIFSVHSKGKHLAKDVDFKKLVFRTIGYSGADIRNLVNESGIMAVRKGHNEICQQDIIDVLDKQLFESMGVVLTEKEQQMHEKNVTLDNKRVLAVHEAGHI
B8LL95_________________LDGDVDDTNVERYSLRQAVILICATNRPDELDERLLQPGRIDRELYIGLPGEKDRVSIFSVHSQGRRLAKDVDFKKLAFRTIGYSGADIRNLVNESGIMAVRKGHDEIFQQDIIDVLDKQLFESMGLVLSEDEQKIHEKNVTFENKRLLAVHEAGHI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
246	16	83			0.994512
247	16	83			0.994512
248			83	16	0.994512
250	83			16	0.994512
319	25		75		0.996473
413			75	25	0.996473
414		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain