SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3150

Length: 804 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3150 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25911	2/12
SustainPine v2.0	sp_v2.0_unigene28282	10/12

Source	Descriptions	Term	Type	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	chromatin remodeling complex subunit	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	methylation-dependent chromatin silencing	GO:0006346	Biological Process	77%
Blast2go	negative regulation of histone H4 acetylation	GO:0090241	Biological Process	77%
Blast2go	maintenance of chromatin silencing	GO:0006344	Biological Process	77%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	77%
Blast2go	regulation of DNA methylation	GO:0044030	Biological Process	77%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	77%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	77%
Blast2go	transposition, RNA-mediated	GO:0032197	Biological Process	77%
Blast2go	positive regulation of histone H3-K9 methylation	GO:0051574	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	77%
Blast2go	nucleosome	GO:0000786	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3		IPR000910	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	HSA	IPR006562	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
230	25			75	0.996473
231	25			75	0.996473
233		75	25		0.996473
237		50		50	1.0
386	16			83	0.994512
573		60		40	1.0
574			40	60	1.0
624		20		80	0.995493
701	33		66		0.997452
702		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain