SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3134

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3134
AATGTATTGAGGTACAAAGGCAATTTGCAGTTGCGCATTGAGGCACAAGGGAAGTATCTGCAGAAGATCATTGAAGAACAGCAAAGACTAAGTGGTGCATTGAAGGATGGTACAGCTTCAGCAAGTTTTAGTTTGCCTGCTTGCACAGGGCAACCTGAACAGGCTGCTGATCTTAAACCAGACCCATCTAACCTGATTCTTATGCCAGTGGCTGCCCAAGATGGTGGAGGAACTGGAGGAGCTTCTAGTTCAGTGGCAAAACATTCTTTGAATTGCTTGTCTCATGATGAATCTCCATCATTTTCTTCACAGCAGGGTCCGCCATCGCCAGAGTCATTAGGAGATGATGAATCATCCAGCGGGGCAAATTCACCTCTGGAAAGTCCACAAAGTGGGCGACCACCCCAGAAGAAACCTAGATTGGACATCAACATT

Ace file of the UniGene biog3_v1.0_unigene3134 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	myb-cc type transfactor	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	75%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR012287	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACF5

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 145 - 421

Fln protein: NVLRYKGNLQLRIEAQGKYLQKIIEEQQRLSGALKDGTASASFSLPACTGQPEQAADLKPDPSNLILMPVAAQDGGGTGGASSSVAKHSLNCLSHDESPSFSSQQGPPSPESLGDDESSSGANSPLESPQSGRPPQKKPRLDINI

Protein Length: 146

Fln nts: AATGTATTGAGGTACAAAGGCAATTTGCAGTTGCGCATTGAGGCACAAGGGAAGTATCTGCAGAAGATCATTGAAGAACAGCAAAGACTAAGTGGTGCATTGAAGGATGGTACAGCTTCAGCAAGTTTTAGTTTGCCTGCTTGCACAGGGCAACCTGAACAGGCTGCTGATCTTAAACCAGACCCATCTAACCTGATTCTTATGCCAGTGGCTGCCCAAGATGGTGGAGGAACTGGAGGAGCTTCTAGTTCAGTGGCAAAACATTCTTTGAATTGCTTGTCTCATGATGAATCTCCATCATTTTCTTCACAGCAGGGTCCGCCATCGCCAGAGTCATTAGGAGATGATGAATCATCCAGCGGGGCAAATTCACCTCTGGAAAGTCCACAAAGTGGGCGACCACCCCAGAAGAAACCTAGATTGGACATCAACATT

Fln Alignment:

Contig3134___LQLRIEAQGKYLQKIIEEQQRLSGALKDGTASASFSLPACTGQPEQAADLKPDPSNLILMPVAAQDXXXXXXXXXSVAKHSLNCLSHDXXXXXXXXXXXXXXXSLGDDESSSGANSPLESPQSGRPPQKKPRLDI
D5ACF5_________________LQLRIEAQGKYLQKIIEEQQRLSGALKDGTTSASFSLPACTGQPEQASDLKPDPSNLIPMPVASQDGGGTGGASSSVAKHSLNCLSHDESPSFSSQQGPPSPDSLGDDESSSGANSPLESPRSGKPPQKKPRLDI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
386	33	66			0.997452
388	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain