SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3133

Length: 605 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3133 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11015	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=SCAR-like protein 1; Oryza sativa subsp. japonica (Rice).	-	-	77%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	cell-cell adhesion	GO:0016337	Biological Process	85%
Blast2go	positive regulation of actin nucleation	GO:0051127	Biological Process	85%
Blast2go	trichome branching	GO:0010091	Biological Process	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	SCAR complex	GO:0031209	Cellular Component	85%
Blast2go	plastoglobule	GO:0010287	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WH2 domain	IPR003124	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
203		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain