SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3114

Length: 1735 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene3114 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2650	3/60
SustainPine v2.0	sp_v2.0_unigene17127	41/60
SustainPine v2.0	sp_v2.0_unigene60822	15/60
SustainPine v2.0	sp_v2.0_unigene61896	1/60

Source	Descriptions	Term	Type	Identity
AutoFact	heterogeneous nuclear ribonucleoprotein A1/A3 [Arabidopsis thaliana] dbj\|BAB08520.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM97131.1\| ribonucleoprotein-like [Arabidopsis thaliana] gb\|AED94553.1\| heterogeneous nuclear ribonucleoprotein A1/A3 [	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	rna recognition motif-containing protein	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPT8

Fln msg:

Fln protein: MASSKDQKAQDVHSNEDGDSEREENASEEQKQEKNNGVSSPGKIFIGGLSRTTTSSAFTKHFSKYGEITDSVIMKDRVSGQPRGFGFVTYADPCVIDKVIQDKHVLDGKAVEIKRTIPRGNSSKGPKTKKVFVGGIPTSITEDEFKDYFSKFGKVVEHQIMQDRGTGRSRGFGFITFDSEQAVEEIMSQGGMLELGGKKVEIKKAEPKKSLPDAGPIHGIDSRPPFIPGGVGGFGDSYSGFGGAGYGSNPYRSAGGYGDRPGGYAGAGYGAPDYGRAYGGYSGAGLGGYAEDASRGYGGRAGSYSEGFGGYGSGLLAGYGVGDGYGAYSDSGYGGSLESRVGPYGSGGSLDSRVGGPYGSGGSLDSRVGGPYGSGGAYGSGRGAYGGSSNGRYHPYAR*

Protein Length: 400

Fln nts: CGGGAGCTAACTCCAATTTACCAAAGCTCAGACCCGACGGTTGAAAAAGGGTTAGGGCTATTTTGGTTGCGATTGTGTATAAATAGTGACGCCATTGAATCACACTATTAGTCTGGAAATTTTGCATTTTGATTGTTGAACCCTTCATTATCAACATCTAGGGTTACCGAGGGTTCTTCGTAGCATCTGTGTCTTAGCTCGATCGCATTCGAAAGGGATCTTCTCTGTTGGTTTTTAAATAGCTTGTG_-_ATGGCTTCTTCGAAGGATCAGAAGGCACAGGATGTCCATTCTAACGAGGATGGTGACTCAGAACGGGAGGAAAACGCCTCAGAAGAGCAAAAACAAGAAAAGAACAATGGAGTTTCCAGCCCTGGGAAAATCTTCATCGGCGGCCTGTCAAGGACTACGACGTCGAGTGCTTTTACAAAGCATTTCAGTAAGTACGGGGAGATAACGGACTCAGTTATAATGAAAGACCGCGTCAGTGGCCAGCCTCGTGGATTCGGGTTTGTGACTTATGCTGATCCCTGTGTCATAGACAAGGTTATACAGGACAAGCACGTTCTTGATGGAAAAGCGGTTGAAATCAAAAGAACCATTCCAAGGGGGAATTCGTCCAAGGGCCCAAAGACGAAAAAAGTATTTGTGGGTGGTATACCTACATCAATTACTGAAGATGAGTTCAAGGACTACTTTTCCAAGTTTGGCAAAGTTGTAGAACATCAGATTATGCAGGATCGAGGCACTGGTCGTTCTAGGGGTTTTGGTTTTATTACTTTTGACAGTGAGCAGGCCGTAGAAGAGATTATGTCTCAAGGCGGGATGCTTGAACTAGGTGGAAAGAAGGTGGAGATCAAGAAGGCTGAACCCAAGAAATCCCTGCCTGATGCTGGGCCTATTCATGGGATTGATAGTAGGCCTCCATTCATACCTGGTGGAGTTGGGGGCTTTGGGGATAGTTATAGTGGGTTTGGAGGGGCAGGTTATGGCAGCAACCCGTATAGGTCAGCAGGAGGTTACGGTGATAGGCCTGGGGGATATGCTGGTGCTGGTTACGGAGCTCCTGATTATGGTAGGGCTTATGGAGGCTATAGTGGTGCTGGTTTAGGGGGCTATGCAGAAGATGCTTCTCGTGGCTATGGAGGTCGTGCTGGGTCTTATAGTGAAGGGTTTGGTGGCTATGGCAGTGGGCTGCTGGCTGGCTATGGAGTTGGTGATGGCTATGGTGCCTATAGTGACAGTGGTTATGGTGGTAGTCTCGAGTCACGTGTTGGTCCCTATGGCAGTGGAGGTAGTCTTGACTCACGTGTTGGAGGCCCCTATGGTAGTGGAGGTAGTCTTGACTCACGTGTCGGAGGTCCCTATGGCAGTGGAGGTGCTTATGGGAGTGGAAGGGGAGCTTATGGAGGCAGTAGTAATGGTCGATATCACCCATATGCCAGGTAG___AACAATTGGCATCAAAGGCTGTCTAAGCAAGTAGTTATTAAGATCAGATACAGAAGTGAGCTTTTGAGCTCTAATCATTTCTATATATTTACATTTTGTAGGTTTTAGGTTTTGGTGATACAAATGCAGTGTCATTTGTAATCACAGATTGCAGTTATATTTTGCTCATGTATATTGGAGGATTCATTTCTGCTGTGTTCTAAGCAGTTTGCCCCATTTGGATTTCTAGACAGTCTCTAGTCATAAATATTAATTGAAATTAACTAGTTATAATTGGCCGGATTGTAACA

Fln Alignment:

Contig3114___MASSKDQKAQDVHSNEDGDSEREENASEEQKQEKNNGVSSPGKIFIGGLSRTTTSSAFTKHFSKYGEITDSVIMKDRVSGQPRGFGFVTYADPCVIDKVIQDKHVLDGKAVEIKRTIPRGNSSKGPKTKKVFVGGIPTSITEDEFKDYFSKFGKVVEHQIMQDRGTGRSRGFGFITFDSEQAVEEIMSQGGMLELGGXXXXXXXXXXXKSLPDAGPIHGIDSRXXXXXXXXXXXXXXXXXXXXXXXXSNPYRS
B8LPT8_________________MASSKDQKTQDVASNEDGDSEREENVEEEQKQEKNNDVSSPGKIFIGGLSRSTTSSAFTKHFSKYGELTDSVIMKDRLTGQPRGFGFVTYADPSVIDKVIQDKHILDGKTVEIKRTIPRGNSSKAPKTKKVFVGGIPTSITEDEFKDYFSKFGKVVEHQIMQDRNTGRSRGFGFITFETEQAVEEIISQGRMLELGGKQVEIKKAEPKKPLPDAGPIYGVDSRPPYIPGGVGGFGDSYNGFGGAGYGSNPYRS

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
182	66		33		0.997452
183	66			33	0.997452
231	75			25	0.996473
502	20	80			0.995493
504		80	20		0.995493
507	16			83	0.994512
509			83	16	0.994512
511		85		14	0.993533
516	11			88	0.923564
517	88			11	0.923564
519		88		11	0.923564
609			87	12	0.992554
610	87			12	0.992554
719	14		85		0.993533
720		14		85	0.993533
722	85			14	0.993533
723		85		14	0.993533
968	85			14	0.993533
1015	11		88		0.923564
1017		11		88	0.923564
1018	11		88		0.923564
1046	14		85		0.993533
1047		14		85	0.993533
1049			85	14	0.993533
1051	14	85			0.993533
1052	14	85			0.993533
1058		85		14	0.993533
1311	16			83	0.994512
1387	25			75	0.996473
1389	25			75	0.996473
1399		33		66	0.997452
1400	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain