SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3103

Length: 2168 nt

UniGene Fasta

>biog3_v1.0_unigene3103
AATGTACATACATGCATGGTTTGGATGCAATTTCTTCATCATCTTCCAATACTGAGCTTTTGGGTTGGGTTATGGTGGGGACTAATTATAATTGGGCTGAAGAGTTTTTAGTACGGTTAGTGGCTTTTAACCTTTTTAGTGGGTGTTCTTCGCCTGCGTTGAGCAGAGTATGAAGGATTGCGTGGGTGTTTATTTCTTTTCGTTAACGGGTGTATGCTAGATTTCAGGTCGCGAAGGCAGAACATCATCTTCATTCGGCGAAATGTAGAAAGAAGGTTGCGATCATACCAGTGAACAGCAGCCAGCTTGCGAAGAAGGATTTGCAGAGAGAATGATGAGTATCACCATGCAAGCTCCGCCAGAGTATGGAGTTCAGGGCGGGCATGTTGGGCAGCCTGCCCTGCCTTCTGCGAGTCCGTGGTGGCCTGGAATTGGGTCATCCTTCGATCAGTTGAAGACGATGGACCACTCGGCTCCTGTGAGACAATTGGGTATTCAACTTCAGCAGTCTTCTGCAATGCTCCAATCTCAACCAGTTGAAGGTCCAGCGCAATTGTTAACTACGACTATGCCACGCGTAACAACTCATTCTGGTTACGATAAGGGTAATGGAGTTGAACCACAACATCAAATATCGTCAAAAACAATTAATTGTTCTGCTCCGTCAGATTGCTTTGTGCCACAGAGTCAACAAGAAATTGATCATTCAATTGCTCGTGCTACTTACCCTTATGCGGAGCCCTATTTTGGAGGTATTTTCGCTACTTATGGACCTCAGGCTATGATTCATCCCCATATGCTTGGAGTGCAACAGGCTCGTATGCCCTTACGAATAGAAACAGAAGAAGAACCTGTATATGTAAATGCAAAACAATACCATGGAATCTTGCGACGCAGACAATTACGAGCCAAGGCAGAATCAGAAAAAAAAGTGATAAAAGTTAGGAAGCCATATCTGCATGAATCTCGACATCTTCACGCTATGCGAAGAGCAAGGGGTTGTGGGGGTCGTTTTCTCAACACAAAGAAGTTAGACCCATCAAAAGTGAATACTGATAATGGAAAGGGATCAGAGGGAGCTCCAGTACGGGCTGGAAGTTCTTCAGGTTCTGAAGGATTTCAGTCACAAGATGGAAATCCAAGAATTTTACAGGAGGTACAAGGTACTACTTCAAGAATGTCAAGCTTAAAAGTTACCAACATGGAAAAATCATACACCGATGGAAAAAGCTACCTTCACCCTCGTAACAATGGTGTATATCACAGTGGACGCCTGCAGCAACATTTCCATGTGTCTGCTTTCCATCATATTTCTAGTGGAGGTGATAAGGGAGAGGGTGGAGATGCAAGGGTCCTTGTATCAAATGGATCTCAGCAGAGGGCTGTTGAGATCCTGTGAAAAGTAGTTTATACAAAGTCTTTGTATGGTCTCTCATATGCTTAGGTTCTTTGTTTCATTCTCAATTCTGAAAATTAGACTGGGTCAAACTGCTCCTATTTCAGGAGAATGGAACAGGGGACTAGGAAGATGCTGGCCTAATGTTTGCAATGTTCTTATTTCAGAAATCCATTCAGGTTATCTTGCTTGGTTTCCCTTCAAAGTTGGTGATGGTTTCGAATTATCATTGCATCTATGGTCTGCAACTTCTCTGCGTTTGGGAGACTTATAATGGAAGTAGCCAGATGGAAGAGCCTGTTGCATTAGGACACGTTTCTGTGATGTGTATACAACGATCACAGCTCAACAGTGTCCCACAATGCTTCAGGGTTGGTTGAGAAATTGACCTTATGCATCTGATACTTTCCAAGGCAATTCATTCTTGGCTGTTTGTGTATTTTCTCGTAGACTTCTGATCAGGTCATGATATGATTAGAAGCTCTTTTGTTCTGAACATTGCACATGTAAATTATCACGTCCGTTGGTATTTTCATGATCTGAATCAGTAAGGTACAATGATGGAGTTATATACCAAACTATCTATTTGATTACATTTCATGTGATACGGTCAAAACTTTGAAGACTCCAATATTTGATCTAGTATTGGAAATACTCCAGTATGATGCTCGTTATTGTGTATTAGAAATGCAGTAACATCTTCATGACTGTCTAAGATATAATGTATATGTTTGGGATAATTATAGGCTTTGCTGCTTTGGTTGTAGTAACT

Ace file of the UniGene biog3_v1.0_unigene3103

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6911	58/90
SustainPine v2.0	sp_v2.0_unigene11292	26/90
SustainPine v2.0	sp_v2.0_unigene35049	6/90

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative CCAAT-binding transcription factor [Oryza sativa Japonica Group]	-	-	1.0e-39	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	nuclear transcription factor y subunit a-9-like	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	60%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	60%
Blast2go	DNA binding	GO:0003677	Molecular Function	60%
Blast2go	CCAAT-binding factor complex	GO:0016602	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	CCAAT-binding factor, conserved site	IPR018362	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQJ9

Fln msg:

Fln protein: MMSITMQAPPEYGVQGGHVGQPALPSASPWWPGIGSSFDQLKTMDHSAPVRQLGIQLQQSSAMLQSQPVEGPAQLLTTTMPRVTTHSGYDKGNGVEPQHQISSKTINCSAPSDCFVPQSQQEIDHSIARATYPYAEPYFGGIFATYGPQAMIHPHMLGVQQARMPLRIETEEEPVYVNAKQYHGILRRRQLRAKAESEKKVIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLDPSKVNTDNGKGSEGAPVRAGSSSGSEGFQSQDGNPRILQEVQGTTSRMSSLKVTNMEKSYTDGKSYLHPRNNGVYHSGRLQQHFHVSAFHHISSGGDKGEGGDARVLVSNGSQQRAVEIL*

Protein Length: 357

Fln nts: AATGTACATACATGCATGGTTTGGATGCAATTTCTTCATCATCTTCCAATACTGAGCTTTTGGGTTGGGTTATGGTGGGGACTAATTATAATTGGGCTGAAGAGTTTTTAGTACGGTTAGTGGCTTTTAACCTTTTTAGTGGGTGTTCTTCGCCTGCGTTGAGCAGAGTATGAAGGATTGCGTGGGTGTTTATTTCTTTTCGTTAACGGGTGTATGCTAGATTTCAGGTCGCGAAGGCAGAACATCATCTTCATTCGGCGAAATGTAGAAAGAAGGTTGCGATCATACCAGTGAACAGCAGCCAGCTTGCGAAGAAGGATTTGCAGAGAGA_-_ATGATGAGTATCACCATGCAAGCTCCGCCAGAGTATGGAGTTCAGGGCGGGCATGTTGGGCAGCCTGCCCTGCCTTCTGCGAGTCCGTGGTGGCCTGGAATTGGGTCATCCTTCGATCAGTTGAAGACGATGGACCACTCGGCTCCTGTGAGACAATTGGGTATTCAACTTCAGCAGTCTTCTGCAATGCTCCAATCTCAACCAGTTGAAGGTCCAGCGCAATTGTTAACTACGACTATGCCACGCGTAACAACTCATTCTGGTTACGATAAGGGTAATGGAGTTGAACCACAACATCAAATATCGTCAAAAACAATTAATTGTTCTGCTCCGTCAGATTGCTTTGTGCCACAGAGTCAACAAGAAATTGATCATTCAATTGCTCGTGCTACTTACCCTTATGCGGAGCCCTATTTTGGAGGTATTTTCGCTACTTATGGACCTCAGGCTATGATTCATCCCCATATGCTTGGAGTGCAACAGGCTCGTATGCCCTTACGAATAGAAACAGAAGAAGAACCTGTATATGTAAATGCAAAACAATACCATGGAATCTTGCGACGCAGACAATTACGAGCCAAGGCAGAATCAGAAAAAAAAGTGATAAAAGTTAGGAAGCCATATCTGCATGAATCTCGACATCTTCACGCTATGCGAAGAGCAAGGGGTTGTGGGGGTCGTTTTCTCAACACAAAGAAGTTAGACCCATCAAAAGTGAATACTGATAATGGAAAGGGATCAGAGGGAGCTCCAGTACGGGCTGGAAGTTCTTCAGGTTCTGAAGGATTTCAGTCACAAGATGGAAATCCAAGAATTTTACAGGAGGTACAAGGTACTACTTCAAGAATGTCAAGCTTAAAAGTTACCAACATGGAAAAATCATACACCGATGGAAAAAGCTACCTTCACCCTCGTAACAATGGTGTATATCACAGTGGACGCCTGCAGCAACATTTCCATGTGTCTGCTTTCCATCATATTTCTAGTGGAGGTGATAAGGGAGAGGGTGGAGATGCAAGGGTCCTTGTATCAAATGGATCTCAGCAGAGGGCTGTTGAGATCCTGTGA___AAAGTAGTTTATACAAAGTCTTTGTATGGTCTCTCATATGCTTAGGTTCTTTGTTTCATTCTCAATTCTGAAAATTAGACTGGGTCAAACTGCTCCTATTTCAGGAGAATGGAACAGGGGACTAGGAAGATGCTGGCCTAATGTTTGCAATGTTCTTATTTCAGAAATCCATTCAGGTTATCTTGCTTGGTTTCCCTTCAAAGTTGGTGATGGTTTCGAATTATCATTGCATCTATGGTCTGCAACTTCTCTGCGTTTGGGAGACTTATAATGGAAGTAGCCAGATGGAAGAGCCTGTTGCATTAGGACACGTTTCTGTGATGTGTATACAACGATCACAGCTCAACAGTGTCCCACAATGCTTCAGGGTTGGTTGAGAAATTGACCTTATGCATCTGATACTTTCCAAGGCAATTCATTCTTGGCTGTTTGTGTATTTTCTCGTAGACTTCTGATCAGGTCATGATATGATTAGAAGCTCTTTTGTTCTGAACATTGCACATGTAAATTATCACGTCCGTTGGTATTTTCATGATCTGAATCAGTAAGGTACAATGATGGAGTTATATACCAAACTATCTATTTGATTACATTTCATGTGATACGGTCAAAACTTTGAAGACTCCAATATTTGATCTAGTATTGGAAATACTCCAGTATGATGCTCGTTATTGTGTATTAGAAATGCAGTAACATCTTCATGACTGTCTAAGATATAATGTATATGTTTGGGATAATTATAGGCTTTGCTGCTTTGGTTGTAGTAACT

Fln Alignment:

Contig3103___GQPALPSA---SPWWPGIGSSFDQ------LKT--MDHSAPV----RQLGIXXXXXXXXXXXXPV----EGPAQLL-TTTMPRVTTHSGYDKGNGVEPQHQISSKTINCSAPSDCFVPQSQQEIDHSIARATYPYAEPYFGGIFATYGPQAMIHPHMLGVQQARMPLRIE-TEEEPVYVNAKQYHGILRRRQLRAKAESEKKVIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLDPSKVNTDNGKGSEGAPVRAXXXXXXXXXXXXXXNPRILQEVQGTTSRMSSLKVTNMEKSYTDGKSYLHPRNNGVYHSGRLQQHFHVSAFHHISSGGDKGEGGDARVLVSNGSQQRAVEI
C0PQJ9_________________GQPNLSSAVPGMPWWNGFGTQFPQSAWCAPVKSLFMDHPSRVPGAIKQVASQSQQLEQPSTQVAVQSQSEGEAVLAGTTRMQSMSNQSGYSGANGEKQHQHQSTKSIIASAPTEYLVPHAQLEFNHSIACAAYPYAEPYFGGILAAYPAQAMIHPNMLGVQQARMPLPLDMTEEEPVYVNAKQYHGILRRRQLRAKAESENKLIKTRKPYLHESRHLHAMKRARGCGGRFLNTKKLEDLKANMDNGKTSEGHPAQAGSSSGSEVLQSENGNGNSTQEVHGACG-LSGSEVTSIAQSSENGTTYQYAHTNGTYLNHYQHQHFHISAFHPLSSGGEEGSSAKSGSILSGGSQQRVVVI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1639	10			90	0.90298
1640			90	10	0.90298
1714		71		28	1.0
1758		66	33		1.0
1778	20			80	0.995493
1779		16	83		0.994512
1781			83	16	0.994512
1782	83			16	0.994512
1856	14			85	0.993533
1857		28	71		1.0
1860		71		28	1.0
1899	28			71	1.0
1903	71			28	1.0
1983	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain