SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3093

Length: 278 nt

UniGene Fasta

>biog3_v1.0_unigene3093
GTCTCCTGTTGCTTTGCATAAAAAGATCATTTCTTCTTTGCTGAGGCCTCGTAACTGGAGGCCTCCTGTAAATAGGGGATTCTTCTTGGATTCCTATGAAGTGGGTGAGCTATGTTATACTGCAGAACAAATCTTCATGCATGAGCCAACAATCCTACAATTAAAGGCTCCAGTCAAAATATTTGGTGATCTTCATGGACAATTTGGTGATTTAATGCGATTGTTTGATGAGTATGGATTTCCTTCAACTGCGGGAGATATTACGTATATTGACTACC

Ace file of the UniGene biog3_v1.0_unigene3093

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7712	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI	-	-	67%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	serine threonine protein phosphatase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	82%
Blast2go	iron ion binding	GO:0005506	Molecular Function	82%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: Distance to subject end: 235 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 92 - 325

Fln protein: SPVALHKKIISSLLRPRNWRPPVNRGFFLDSYEVGELCYTAEQIFMHEPTILQLKAPVKIFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDY

Protein Length: 93

Fln nts: GTCTCCTGTTGCTTTGCATAAAAAGATCATTTCTTCTTTGCTGAGGCCTCGTAACTGGAGGCCTCCTGTAAATAGGGGATTCTTCTTGGATTCCTATGAAGTGGGTGAGCTATGTTATACTGCAGAACAAATCTTCATGCATGAGCCAACAATCCTACAATTAAAGGCTCCAGTCAAAATATTTGGTGATCTTCATGGACAATTTGGTGATTTAATGCGATTGTTTGATGAGTATGGATTTCCTTCAACTGCGGGAGATATTACGTATATTGACTACC

Fln Alignment:

Contig3093___LDSYEVGELCYTAEQIFMHEPTILQLKAPVKIFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDY
D5AA89_________________LSEAEIRQLCLTSKDIFISQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
78	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain