SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3058

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3058
CAAAGTGCAGGAACTCAACTTTAAAAGCAAGCCAAATGTATGGGCATATTTCTCTGTTAAGTCAGGAGGAGGAATTCACGAGTTTTCAGATTCTCAGTTTGGTCACGTGTTTGCTTTCGGAGAATCTCGAGCTTTGGCCATAGCTAATATGGTACTTGGACTGAAGGAACTTCATATTCGAGGAGAGATTCGTACTAATGTTGACTACACAGTAGACCTTCTGCATGATGTGGAATATAGAGAAAACAAGATTCACACTGGTTGGCTAGACAGTAGGATTGCAATGCATGTTAGAGCAGAGAGGCCACCTTGGTACCTTTCAGTGGTTGGAGGAGCACTCTATAAAGCGACAACAATGAGTGCGGCAAGGGTTTCTGAATATATTGGGTATCTTGAGAAAGGACAAATCCCGCCAAAGAATATCTCTTACATT

Ace file of the UniGene biog3_v1.0_unigene3058 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4792	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	acetyl-CoA carboxylase [Brassica napus]	-	-	87%
FL-Next	sp=Acetyl-CoA carboxylase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	86%
Blast2go	acetyl- carboxylase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetyl-CoA carboxylase.	EC:6.4.1.2	-	0.0	93%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid biosynthesis	00061		93%
Blast2go	Tetracycline biosynthesis	00253		93%
Blast2go	Pyruvate metabolism	00620		93%
Blast2go	Propanoate metabolism	00640		93%
Blast2go	Carbon fixation pathways in prokaryotes	00720		93%
Blast2go	Metabolic pathways	01100		93%
Blast2go	Biosynthesis of secondary metabolites	01110		93%
Blast2go	Biotin carboxylase.	EC:6.3.4.14	-	93%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	93%
Blast2go	Metabolic pathways	01100		0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate biosynthetic process	GO:0042218	Biological Process	93%
Blast2go	root development	GO:0048364	Biological Process	93%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	93%
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	93%
Blast2go	fatty acid elongation	GO:0030497	Biological Process	93%
Blast2go	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	biotin carboxylase activity	GO:0004075	Molecular Function	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	Carboxyl transferase	IPR000022	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, N-terminal	IPR011762	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	Acetyl-CoA carboxylase, central domain	IPR013537	-	-
Sma3	ATP-grasp fold, subdomain 1	IPR013815	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38970

Fln msg: Distance to subject end: 1661 aas, your sequence is shorter than subject: 144 - 2254

Fln protein: KVQELNFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKELHIRGEIRTNVDYTVDLLHDVEYRENKIHTGWLDSRIAMHVRAERPPWYLSVVGGALYKATTMSAARVSEYIGYLEKGQIPPKNISYI

Protein Length: 145

Fln nts: CAAAGTGCAGGAACTCAACTTTAAAAGCAAGCCAAATGTATGGGCATATTTCTCTGTTAAGTCAGGAGGAGGAATTCACGAGTTTTCAGATTCTCAGTTTGGTCACGTGTTTGCTTTCGGAGAATCTCGAGCTTTGGCCATAGCTAATATGGTACTTGGACTGAAGGAACTTCATATTCGAGGAGAGATTCGTACTAATGTTGACTACACAGTAGACCTTCTGCATGATGTGGAATATAGAGAAAACAAGATTCACACTGGTTGGCTAGACAGTAGGATTGCAATGCATGTTAGAGCAGAGAGGCCACCTTGGTACCTTTCAGTGGTTGGAGGAGCACTCTATAAAGCGACAACAATGAGTGCGGCAAGGGTTTCTGAATATATTGGGTATCTTGAGAAAGGACAAATCCCGCCAAAGAATATCTCTTACATT

Fln Alignment:

Contig3058___KVQELNFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKELHIRGEIRTNVDYTVDLLHDVEYRENKIHTGWLDSRIAMHVRAERPPWYLSVVGGALYKATTMSAARVSEYIGYLEKGQIPPKNISYI
Q38970_________________RVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHISLV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
294	16			83	0.994512
295		16	83		0.994512
296	16		83		0.994512
297		83		16	0.994512
298		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain