SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene3026

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene3026
CAGCACAACCTGAAGTGATGCGAGCGGCAGAAAAGGATGATCACTATGCATCTTATGTTTATGATGCCTGCCATGATGCTTTTCGCCATGTATTTGGCACAAGACTTGCTGTCGCTTACCAGAATGAGATGAAATTGGCAGGACAAATGCTCTATTATTTGCTGACAACAGGATCGGGACTACAAACACTGGGAGAAGAATATTGTGATCTGACCCAGGTTGCACGTTCATCTGGTGTTCCTCCGACGCCAGCAAGGCGGATTCTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene3026 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7231	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	peroxin 10 [Arabidopsis thaliana] sp\|Q9SYU4.1\|PEX10_ARATH RecName: Full=Peroxisome biogenesis factor 10; AltName: Full=PER10; AltName: Full=Peroxin-10; AltName: Full=Peroxisomal biogenesis factor 10; Short=AtPEX10; Short=AthPEX10; AltName: Full=Peroxisome	-	-	55%
FL-Next	sp=Peroxisome biogenesis factor 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	peroxisome biogenesis factor 10-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	attachment of peroxisome to chloroplast	GO:0010381	Biological Process	73%
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	73%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	73%
Blast2go	photorespiration	GO:0009853	Biological Process	73%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	cytosol	GO:0005829	Cellular Component	73%
Blast2go	peroxisome	GO:0005777	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pex, N-terminal	IPR006845	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SYU4

Fln msg: Distance to subject end: 262 aas, your sequence is shorter than subject: 90 - 381

Fln protein: AQPEVMRAAEKDDHYASYVYDACHDAFRHVFGTRLAVAYQNEMKLAGQMLYYLLTTGSGLQTLGEEYCDLTQVARSSGVPPTPARRILLH

Protein Length: 91

Fln nts: CAGCACAACCTGAAGTGATGCGAGCGGCAGAAAAGGATGATCACTATGCATCTTATGTTTATGATGCCTGCCATGATGCTTTTCGCCATGTATTTGGCACAAGACTTGCTGTCGCTTACCAGAATGAGATGAAATTGGCAGGACAAATGCTCTATTATTTGCTGACAACAGGATCGGGACTACAAACACTGGGAGAAGAATATTGTGATCTGACCCAGGTTGCACGTTCATCTGGTGTTCCTCCGACGCCAGCAAGGCGGATTCTTCTACATT

Fln Alignment:

Contig3026___AQPEVMRAAEKDDHYASYVYDACHDAFRHVFGTRLAVAYQNEMKLAGQMXXXXXXXXXXXXXXGEEYCDLTQVARSSGVPPTPARRIL
Q9SYU4_________________AQPEIMRAAEKDDQYASFIHEACRDAFRHLFGTRIALAYQKEMKLLGQMLYYVLTTGSGQQTLGEEYCDIIQVAGPYGLSPTPARRAL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
31	25		75		0.996473
35			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain