SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2931

Length: 847 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2931

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2085	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	putative topoisomerase VI subunit B [Oryza sativa Indica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dna topoisomerase 6 subunit b	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	trichome differentiation	GO:0010026	Biological Process	87%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	87%
Blast2go	DNA endoreduplication	GO:0042023	Biological Process	87%
Blast2go	DNA topological change	GO:0006265	Biological Process	87%
Blast2go	pattern specification process	GO:0007389	Biological Process	87%
Blast2go	identical protein binding	GO:0042802	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	87%
Blast2go	DNA topoisomerase complex (ATP-hydrolyzing)	GO:0009330	Cellular Component	87%
Blast2go	chromosome	GO:0005694	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase VI, subunit B, transducer	IPR015320	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A810

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 282 - 676

Fln protein: NVKNIAGFDNPGKSLYTTVRELVENALDSTESVGELPAIEVTIEEITKSTFNTMIGLIDRERVDAALYGDFESEKAREKRLAKEAREQEKLAKVAALGKKPKEMSTTKSQKARGETSFFRVTCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSAMQGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDRWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQFLFRYISATADKNVTIRFARRTDVMPPVPIE

Protein Length: 283

Fln nts: AATGTCAAAAACATTGCTGGTTTTGATAACCCGGGCAAGAGTCTTTATACGACGGTGCGCGAGCTTGTGGAGAATGCACTTGATTCTACGGAGTCCGTTGGCGAACTTCCGGCAATTGAAGTTACTATAGAGGAGATTACTAAGTCCACTTTTAATACCATGATTGGGCTAATAGATCGGGAGCGGGTGGATGCAGCATTGTATGGTGATTTTGAATCTGAGAAGGCTCGTGAGAAACGTCTAGCTAAAGAAGCTCGTGAACAAGAGAAGCTGGCAAAGGTTGCTGCACTTGGGAAGAAGCCTAAAGAGATGTCCACTACAAAGAGTCAGAAAGCCCGGGGCGAGACATCATTTTTCAGGGTGACTTGTAAGGATAATGGAAAGGGAATGCCACACGATGACATCCCAAATATGCTTGGAAGAGTGCTTTCTGGAACAAAGTATGGGTTGAAACAAACTCGTGGAAAATTTGGACTAGGTGCAAAGATGGCGTTGATATGGTCCAAGATGAGTACTGGACTTCCAATAGACATTTATTCAGCAATGCAAGGCCAAAATTACCTATCATTTTGTAGGCTTGATATTGATATTCATAAAAATATTCCTCATGTTCATGTACATGAAAAGCGGGACAACAATGATAGATGGAATGGGGCAGAAATTCAAGTTACAATTGAAGGAAATTGGACAACTTATCGTTCAAAGATAATACAGTATATGCGCCAAATGGCTGTAATAACACCATATGCTCAGTTTCTCTTCCGATACATTTCAGCAACAGCGGACAAGAATGTCACAATAAGATTTGCACGAAGGACAGATGTGATGCCTCCAGTACCTATTGAAA

Fln Alignment:

Contig2931___KNIAGFDNPGKSLYTTVRELVENALDSTESVGELPAIEVTIEEITKSTFNTMIGLIDRERVDAALYGDFESEKAREKRLAKEAREQEKLAKVAALGKKPKEMSTTKSQKARGETSFFRVTCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSAMQGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDRWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQFLFRYISATADKNVTIRFARRTDVMPPVPIE
D5A810_________________KNIAGFDNPGKSLYTTVRELAENALDSTESVAELPAIEVTIEEISKSTFNTMIGLIDRERVDAALYGDFESGKAREKRLAKEAREQERLAKSAALGKKPKEMSTTKSQKGRGETTFFRVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSGMKGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDKWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQLLFRYVSATVDKNVTIRFARRTDVMPPVPIE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
309	14		85		0.993533
402	14	85			0.993533
405		85		14	0.993533
446	14		85		0.993533
447	14		85		0.993533
452	87	12			0.992554
454		87		12	0.992554
455	85			14	0.993533
515	14	85			0.993533
519	85			14	0.993533
669	16			83	0.994512
671		83	16		0.994512
672	83			16	0.994512
710	75		25		0.996473
734	25			75	0.996473
735			75	25	0.996473
745	25	75			0.996473
749	75			25	0.996473
825		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain