SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2916

Length: 343 nt

UniGene Fasta

>biog3_v1.0_unigene2916
CGGCACTTGAATCGTAGAGTAACGAGTGTGAATATATCAAATCTCATCATGACCAGTGCACTTCTGGAGGATTTATCGAGTATATAGAGTTCTTCTACTGTGCATGTCAAGGATGGGCAATTATCAGGTACACAGTGCTGGTTGTGTGGCTTGTGGCATTGTTACTATATGCTGGGGAATACAGCGACAGAGTATTTTTGCTATTCTTTGAAGATGATGTGTAGTCTGTTGAAGCTGCATCCCCACGGTTGCAGGCGTGACTCTTCTTCCTCTGGGAAATGGAGCGTCCAGATGTGTTTGCCAGTATTGCGTCCTTACGTTGGCGCGGATGCTGGGCAATTAG

Ace file of the UniGene biog3_v1.0_unigene2916

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5388	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	cation/calcium exchanger 3 [Arabidopsis thaliana] sp\|Q9LJI2.1\|CCX3_ARATH RecName: Full=Cation/calcium exchanger 3; Short=AtCCX3; AltName: Full=Protein CATION CALCIUM EXCHANGER 3; AltName: Full=Protein CATION EXCHANGER 9 dbj\|BAB02970.1\| Na/Ca,K-exchanger-l	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	50%
Blast2go	cation calcium exchanger 4	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	63%
Blast2go	sodium ion export	GO:0071436	Biological Process	63%
Blast2go	response to cation stress	GO:0043157	Biological Process	63%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	63%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	63%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	63%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	63%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	63%
Blast2go	mitochondrion	GO:0005739	Cellular Component	63%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	63%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QVW0

Fln msg: Separated hits, possible frame ERROR between 101 and 139, and overlapping frame ERROR between 243 and 242, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 430 aas, your sequence is shorter than subject: 115 - 628

Fln protein: ALES*SNECEYIKSHHDQCTSGGFIEYIEFFYxxxxxxxxxxxxxxWLCGLWHCYYMLGNTATEYFCYSLKMMCSLLKLxxxTVAGVTLLPLGNGASRCVCQYCVLTLARMLGN*

Protein Length: 116

Fln nts: CGGCACTTGAATCGTAGAGTAACGAGTGTGAATATATCAAATCTCATCATGACCAGTGCACTTCTGGAGGATTTATCGAGTATATAGAGTTCTTCTACTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGTTGTGTGGCTTGTGGCATTGTTACTATATGCTGGGGAATACAGCGACAGAGTATTTTTGCTATTCTTTGAAGATGATGTGTAGTCTGTTGAAGCTGCxxxxxxCCACGGTTGCAGGCGTGACTCTTCTTCCTCTGGGAAATGGAGCGTCCAGATGTGTTTGCCAGTATTGCGTCCTTACGTTGGCGCGGATGCTGGGCAATTAG

Fln Alignment:

Contig2916___SNECEYIKSHHDQCTSGGFIEYIEFFYCxxxxxxxxxxxxxWLCGLWHCYYMLGNTATEYFCYSLKMMCSLLKLHxTVAGVTLLPLGNGAS
D8QVW0_________________SSPCSYAMAHED-CQSGGLFEYIQIYYCxxxxxxxxxxxxxWLVAL---FYMLGNTAADYFCSCLERLSQLLRLPxTVAGVTLLPLGNGAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain