SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2882

Length: 920 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2882

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25149	1/16
SustainPine v2.0	sp_v2.0_unigene25897	2/16
SustainPine v2.0	sp_v2.0_unigene28441	12/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	4.0e-07	21%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	wd repeat-containing	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	83%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	83%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	83%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	83%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	cytosol	GO:0005829	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 169 - 1131

Fln protein: DTKVSVVTQMASVSTPGAQTVGESDRVASTVSMAGLNGVDSRSVGDKVRVAEDSVDKNKNWKLTEISEPAxxxVGVFHAGSLRLRCRISPSSYLSPTVSSGVYPLVIAAHPSEPNQFALGLSDGGVHVLEPLESEGKWGTGPPVENGLASNASTVLTTGTSGLEQAPR*

Protein Length: 170

Fln nts: CTGATACGAAGGTGTCAGTAGTAACTCAAATGGCATCTGTAAGCACACCTGGGGCACAAACTGTTGGGGAATCTGATCGGGTTGCTTCCACAGTTTCCATGGCTGGACTGAATGGAGTGGATTCTAGGAGTGTTGGAGATAAGGTCAGAGTGGCAGAAGATTCAGTAGATAAAAACAAGAACTGGAAGCTAACTGAAATATCCGAACCAGCTxxxxxxxxxGTGGGTGTATTCCATGCTGGATCACTGCGGTTACGATGTCGAATTAGTCCATCATCGTATCTTTCACCTACAGTCAGCTCTGGTGTGTACCCGCTTGTAATTGCAGCTCATCCTTCTGAGCCAAATCAATTTGCATTGGGATTGTCTGATGGGGGTGTACATGTTTTGGAGCCTTTAGAGTCGGAAGGAAAGTGGGGTACTGGACCACCTGTGGAAAATGGGTTGGCAAGCAATGCTTCTACTGTTCTTACAACTGGAACTTCAGGTTTAGAGCAAGCTCCAAGGTGATTTGTTTCTATCGAATATTTGCATATTTGCACTGAACCCCAACTCCTAGCTCTTACGTGGTGATCACATGTTTTAATGTGGGTCCCCCATTTATTGTGTAGCCTTTGAGCTATGACGTTGAGTGCCTTTTGTATTCAAGGTTTACATTGCATACTGTGATGCCAACTTGCACCAATGCTAGTGGCTCCATGTCTTTCTTAATGCATGAGTTAAGCTGTCTATATGAAGTCATTGCTGGAAATCCCTTCTGGGTATCGATAGTCAAGATCGGTGGCTCATGTTTAGTTTGAAAATGTATTTGTTGTTTTAAAAATTGTTAGGTGTATCACTAAGCAAGGGATCACACACACTGCTTTCCATAAAAAATTGTAGGCTTGTGAGGTTTAAAGAGTTGTGTCTTCCAGGTTTCAATG

Fln Alignment:

Contig2882___VTQMASVSTPGAQTVGESDRVASTVSMAGLNGVDSRSVGD-KVRVAEDSVDKNKNWKLTEISEPAQCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSAVGVFHAGSLRLRCRIXXXXXXXXXXXXG-VYPLVIAAHPSEPNQFALGLSDGGVHVLEPLESEGKWGTGPPVENGLASNASTVLTTGTSGLEQAPR
Q94AI7_________________INSIAAAAAAAATSAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
291		50	50		1.0
292	50			50	1.0
293			50	50	1.0
666	12		87		0.992554
671		87		12	0.992554
711	14		85		0.993533
715			85	14	0.993533
724	16			83	0.994512
725			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain