SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2877

Length: 1808 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene2877 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16286	8/57
SustainPine v2.0	sp_v2.0_unigene25591	2/57
SustainPine v2.0	sp_v2.0_unigene38151	8/57
SustainPine v2.0	sp_v2.0_unigene60897	37/57

Source	Descriptions	Term	Type	Identity
AutoFact	3-dehydroquinate dehydratase/shikimate 5-dehydrogenase (Fragment) n=1 Tax=Juglans regia RepID=A7XEE1_9ROSI	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	bifunctional 3-dehydroquinate dehydratase shikimate chloroplastic-like	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.2.1.1-	-	0.0	79%
Blast2go	Shikimate dehydrogenase.	EC:1.1.1.25	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	79%
Blast2go	Biosynthesis of phenylpropanoids	01061	79%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	79%
Blast2go	Biosynthesis of plant hormones	01070	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	shikimate metabolic process	GO:0019632	Biological Process	79%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	3-dehydroquinate dehydratase activity	GO:0003855	Molecular Function	79%
Blast2go	shikimate 3-dehydrogenase (NADP+) activity	GO:0004764	Molecular Function	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	3-dehydroquinate dehydratase, active site	IPR018508	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Dehydroquinase class I	IPR001381	-	-
Sma3	Shikimate dehydrogenase	IPR011342	-	-
Sma3	Shikimate dehydrogenase substrate binding, N-terminal	IPR013708	-	-
Sma3	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	IPR006151	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLR2

Fln msg:

Fln protein: MAQMVKNGCLLCIPLVAQSVEEMLSQMELARIHGADCVELRIDHVRNFNPRVDLDTLLKARTMPAIVTYRPKWEGGAYEGDEGNRLDVLRLAMELGADYIDVELQVASDFIKSISRKKRENSKIIVSNHNYQYTPSLEDLGLLVARIQSTGADIVKIATTATDITDVARIFRVLTYSQVPILALVMSERGLISRLLCPKFGGYLTFGSLEAGKESAPGQATLDDMLNTYKIRGLGRDTKVFGLIGNPVSHSKGPTLHNRAFREIGIDAMYVPFLVDDIKEFLKVYSSPDFAGFSVTIPYKEAALECCDEVDPIARSIGAVNTIVRRQSDGKLIGYNTDAVGAISAIEDALKGKHNDGDWTHSSPLAGKLFLVVGAGGAGKALAFGAKQKGARIVISNRNYERAKALAIQVEGEAIPLDKLDHFHPENGMILANTTSMGMQPNVSQTPISKEALSSYAVVFDAVYTPKWTRLLQEAEATGALVVSGLEMFIRQAMGQFELFTGCKAPEKLIREIVLKYT*

Protein Length: 520

Fln nts: GGAGTAGCATTGAATATCTGCAGGTTCTTCTGCTTGATTTCCAGAGGATACAGATGAATGAGAAATGATCATCTAGCTATTGTTGTATCTTGCTAGTACTTATCAACTATGTAGCATTTTTTCACTAAAAGCTTTGGATATCTTTGAAGATTTTGTGATCAAGGCTGGGGAAGAGCATTAAGTTGATAGCGATCAGCTGCTGGTTGACAAACATTCTATATTAAAG_-_ATGGCACAAATGGTTAAAAATGGTTGTCTTCTGTGCATCCCCTTAGTGGCTCAGTCTGTGGAAGAGATGCTGTCTCAAATGGAGCTGGCACGGATCCATGGTGCAGATTGTGTAGAGCTTCGCATTGATCACGTGAGAAATTTTAATCCTCGAGTTGATTTAGATACGCTTTTGAAAGCCAGAACAATGCCTGCAATTGTCACTTACAGGCCAAAATGGGAAGGTGGAGCATATGAAGGTGATGAAGGAAATCGACTAGATGTACTTCGCTTAGCTATGGAGCTAGGAGCCGATTATATTGATGTGGAACTTCAGGTTGCTTCTGATTTCATTAAGAGCATTTCCAGAAAGAAACGAGAAAATAGCAAGATCATTGTTTCAAATCATAATTACCAATATACACCATCACTTGAGGATCTTGGCCTTCTTGTGGCAAGAATACAATCTACAGGAGCTGATATAGTGAAGATCGCAACGACTGCTACTGATATTACTGATGTTGCTCGAATATTTCGGGTGCTTACATACTCTCAAGTTCCCATTCTTGCACTTGTAATGAGTGAGCGTGGGCTAATAAGCCGTCTTCTCTGTCCAAAATTTGGTGGATATCTTACATTTGGCTCCCTTGAAGCTGGGAAAGAATCAGCTCCTGGACAGGCAACTTTGGATGACATGCTAAATACATATAAGATCCGAGGCTTGGGGAGAGACACGAAAGTCTTTGGACTTATCGGAAATCCGGTCAGTCACAGTAAAGGACCAACTTTGCACAATAGGGCATTCAGAGAGATAGGAATTGATGCAATGTATGTGCCTTTTCTTGTTGATGATATTAAAGAGTTTCTCAAAGTTTATTCATCTCCAGACTTCGCTGGTTTCAGTGTTACCATTCCTTACAAGGAGGCTGCTCTTGAATGTTGTGACGAAGTTGATCCAATTGCACGGTCTATTGGAGCAGTAAATACAATAGTGAGGAGACAAAGTGACGGAAAATTGATTGGGTATAATACAGATGCTGTTGGTGCTATTTCTGCAATTGAAGATGCCTTAAAAGGTAAACATAATGATGGAGATTGGACTCACAGTTCTCCCCTTGCCGGCAAATTGTTTTTGGTTGTTGGAGCTGGAGGAGCTGGTAAAGCACTTGCATTTGGGGCCAAGCAAAAAGGCGCAAGGATTGTAATTTCCAACCGTAATTATGAGCGTGCAAAGGCTTTGGCAATCCAAGTTGAAGGAGAAGCTATCCCTCTAGACAAATTGGATCACTTCCATCCAGAAAATGGAATGATTCTTGCAAACACAACATCAATGGGGATGCAGCCAAATGTCAGCCAGACACCTATATCTAAGGAGGCTTTATCGTCATATGCTGTGGTTTTTGATGCTGTTTATACACCAAAATGGACGAGACTCTTGCAAGAAGCTGAAGCTACTGGAGCTTTGGTTGTCAGTGGGCTGGAGATGTTCATAAGGCAGGCAATGGGACAGTTTGAACTATTCACCGGCTGTAAAGCACCTGAAAAATTGATTCGGGAAATAGTTTTGAAATATACTTGA___TGATATTAAAGAGTTTCTCAAAGTT

Fln Alignment:

Contig2877___MAQMVKNGCLLCIPLVAQSVEEMLSQMELARIHGADCVELRIDHVRNFNPRVDLDTLLKARTMPAIVTYRPKWEGGAYEGDEGNRLDVLRLAMELGADYIDVELQVASDFIKSISRKKRENSKIIVSNHNYQYTPSLEDLGLLVARIQSTGXXXXXXXXXXXXXXXXXXIFRVLTYSQVPILALVMSERGLISRLLCPKFGGYLTFGSLEAGKESAPGQATLDDMLNTYKIRGLGRDTKVFGLIGNPVSHSKGPTLHNRAFREIGIDAMYVPFLVDDIKEFLKVYSSPDFAGFSVTIPYKEAALECCDEVDPIARSIGAVNTIVRRQSDGKLIGYNTDAVGAISAIEDALKGKHNDGDWTHSSPXXXXXXXXXXXXXXXXXXXXXXXXXXARIVISNRNYERAKALAIQVEGEAIPLDKLDHFHPENGMILANTTSMGMQPNVSQTPISKEALSSYAVVFDAVYTPKWTRLLQEAEATGALVVSGLEMFIRQAMGQFELFTGCKAPEKLIREIVLKYT
B8LLR2_________________MAEKVQNDCLLCIPLVGQSMEEMLSQMELARIHGADCVELRIDHVRNFNPRVDLDTLLKARTMPAIVTYRPKWEGGAYEGDEGKRLDVLRLAMELGADYIDVELQVASDFIKSISNKKRENSKIIVSNHNYQFTPSLEDLGLLVARIQSTGADIVKIATTATDITDVARIFRVLAYCQVPILALVMSERGLISRLLCPKFGGYLTFGSLEAGKESAPGQATLADMLNIYKIRGLGRDTKVFGLIGNPVSHSKGPTLHNRAFGEIGFDAIYVPFLVDDIKEFLKVYSSPDFAGFSVTIPHKEAALECCDEVDPIARSIGAVNTIVRRQSDGKLIGYNTDSVGAISAIEDALKGKHNYGDWTHSSPLAGKLFLIVGAGGAGKALAFGAKQKGARVVIANRNYERAKALAIQVEGEAIPLDKLDHFRPETGMILANTTSMGMHPNVSQTPISKEALSSYAVVFDAVYTPKWTRLLQDAEATGALVVCGLEMFIRQAMGQFELFTGCKAPEKLMREIVLKYT

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
97	25	75			0.996473
155	16		83		0.994512
156		83		16	0.994512
157			16	83	0.994512
330	11			88	0.923564
331		11	88		0.923564
332	11			88	0.923564
333		88		11	0.923564
347	12			87	0.992554
348	12	87			0.992554
350		87	12		0.992554
351		87		12	0.992554
359		25		75	1.0
410	25	75			0.996473
459	33	66			0.997452
463		66		33	0.997452
505	25		75		0.996473
578	20			80	0.995493
589	80			20	0.995493
625		25		75	0.996473
630	25			75	0.996473
636	75			25	0.996473
717	16		83		0.994512
718	83	16			0.994512
720			83	16	0.994512
773		12	87		0.992554
774		87		12	0.992554
808	28		71		1.0
809	28	71			1.0
837			66	33	1.0
858	66		33		1.0
985		83		16	0.994512
986		83		16	0.994512
1227		12		87	0.992554
1229		87		12	0.992554
1231		85		14	0.993533
1245	85	14			0.993533
1248			85	14	0.993533
1259	83	16			0.994512
1262		83		16	0.994512
1276	80	20			0.995493
1277	20		80		0.995493
1342	25			75	0.996473
1346		75		25	0.996473
1361	25	75			0.996473
1364		75	25		0.996473
1365		75		25	0.996473
1441		33	66		0.997452
1714	40		60		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain