SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2870

Length: 505 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2870
GTGGATTATGCTTGTGTTCTCAAGATCAATCCGGAAGTTCCCTTGGATATAGCATGCTTGCTAGGCTGTGGACTGGCCACAGGACTTGGAGCTGTATGGAACATAGCAGACAAGCATCCAGGATAATTGGCATTGACACAAATCCCAACAAGTTTCCTAAAGCCAAAATCCTGGGAGTGACAGACTGCATCAACCCAAAAGACTACGAAAAGCCCATTCAGGAGGTGATAAGAGATATATCAAATTGGCGGTGTGGATTACGGCTTTGAATGCATTGGAAATACAGATATCTTATACCAGTGCTTTCTGGCCACCAATGATGTCTGGGGCTTGACAGTATTGTTGGGATATGATTCGAGTCCAAGAAAGCTAAGCCTTCTTCCAACAGAGTTGTTTATGGGTCGGAGGATTGTGGCATCCATATTTGGTGGATTCAAGGGAAAATCCCAATTGCCTAATCTTATAGAAAAGTGTGCAAGCAAGGAAGTCCAAGTAAAGGAACATT

Ace file of the UniGene biog3_v1.0_unigene2870 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15885	3/4
SustainPine v2.0	sp_v2.0_unigene16057	1/4

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RYV6_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	alcohol dehydrogenase-like 3	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	ethanol oxidation	GO:0006069	Biological Process	70%
Blast2go	alcohol dehydrogenase activity, zinc-dependent	GO:0004024	Molecular Function	70%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase	IPR014183	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZ44

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 168 - 405

Fln protein: VDYACVLKINPEVPLDIACLLGCGLATGLGAVWNIADKHPG*LALTQIPTSFLKPKSWE*QTASTQKTTKSPFRR**EIYQIGGVDYGFECIGNTDILYQCFLATNDVWGLTVLLGYDSSPRKLSLLPTELFMGRRIVASIFGGFKGKSQLPNLIEKCASKEVQVKEH

Protein Length: 169

Fln nts: GTGGATTATGCTTGTGTTCTCAAGATCAATCCGGAAGTTCCCTTGGATATAGCATGCTTGCTAGGCTGTGGACTGGCCACAGGACTTGGAGCTGTATGGAACATAGCAGACAAGCATCCAGGATAATTGGCATTGACACAAATCCCAACAAGTTTCCTAAAGCCAAAATCCTGGGAGTGACAGACTGCATCAACCCAAAAGACTACGAAAAGCCCATTCAGGAGGTGATAAGAGATATATCAAATTGGCGGTGTGGATTACGGCTTTGAATGCATTGGAAATACAGATATCTTATACCAGTGCTTTCTGGCCACCAATGATGTCTGGGGCTTGACAGTATTGTTGGGATATGATTCGAGTCCAAGAAAGCTAAGCCTTCTTCCAACAGAGTTGTTTATGGGTCGGAGGATTGTGGCATCCATATTTGGTGGATTCAAGGGAAAATCCCAATTGCCTAATCTTATAGAAAAGTGTGCAAGCAAGGAAGTCCAAGTAAAGGAACATT

Fln Alignment:

Contig2870___VDYACVLKINPEVPLDIXXXXXXXXXXXXXAVWNIADKHPG*--------------------------LALTQIPTSFLKPKSWEXXXXXXXXXXXSPFRR**EIYQIGGVDYGFECIGNTDILYQCFLATNDVWGLTVLLGYDSSPRKLSLLPTELFMGRRIVASIFGGFKGKSQLPNLIEKCASKEVQVKE
A9NZ44_________________VDSKCVAKINPETPLDKACLFGCGITTGVGAALYTADIEPGSTVAIFGLGTVGLAVAEGARIRGASKIIGVDTNPNKFIKAKALGVTECINPKDHEKPIQEVITEKSEGGVDYSFECIGNTDVLYQAFLATRPALGLTVLLGVDISPRKISLHPIDLFSGRRIVATTFGGVKGKTQLPYLVEMFMNKEIRVEE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
107	33	66			0.997452
111	66			33	0.997452
252		80		20	0.995493
254	75		25		0.996473
263	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain