SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2868

Length: 503 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2868
TTATTCAAACAGAGATTTCAATGGATCAAGTTTCTCTGCAACCTGGATTCCGTTTCCATCCCACTGACGAAGAGCTAGTCAGTTACTACTTGAAGAGAAAAGTTCGTGGACAACGTTTTAGTTTCAATGCAATTTCCGAGATTGATCTATATAAGCTTGAGCCTTGGGATTTACCAGGCAAATCTTGCCTAAAGAGCAGAGACTTGGAATGGTATTTTTTCAATCCCAAGGATAGAAAATATCCCAATGGTTCACGGACAAATCGATCAACAAAAGATGGTTACTGGAAAACGACAGGAAAAGACCGAGCTATTTCTTCAGCTTCAAAAACAGTGGGGATGAAAAAGACACTAGTATACCACAGAGGACGAGCTCCCCGTGGGGAAAGGACCAACTGGGTGATGCACGAATTCAGACTTGAAGGGAAGGATTTAAAAATGTCCAACATAGCTCAGGACTCCTATGTACTATGTCGGGTATTCCAGAAGAGTGGTCCTGGTCCC

Ace file of the UniGene biog3_v1.0_unigene2868 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2148	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain-containing protein 78 [Arabidopsis thaliana] sp\|Q84K00.2\|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb\|CAB85547.1\| putative protein [Arabidopsis thaliana] gb\|AAM20460.1\| putative protein [Arabidopsis thaliana] gb	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	nac domain ipr003441	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	leaf senescence	GO:0010150	Biological Process	81%
Blast2go	regulation of flavonoid biosynthetic process	GO:0009962	Biological Process	81%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	81%
Blast2go	response to high light intensity	GO:0009644	Biological Process	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	81%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	81%
Blast2go	cytoplasm	GO:0005737	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQV4

Fln msg: Distance to subject end: 499 aas, your sequence is shorter than subject: 161 - 660

Fln protein: MDQVSLQPGFRFHPTDEELVSYYLKRKVRGQRFSFNAISEIDLYKLEPWDLPGKSCLKSRDLEWYFFNPKDRKYPNGSRTNRSTKDGYWKTTGKDRAISSASKTVGMKKTLVYHRGRAPRGERTNWVMHEFRLEGKDLKMSNIAQDSYVLCRVFQKSGPGP

Protein Length: 162

Fln nts: TTATTCAAACAGAGATTTCA_-_ATGGATCAAGTTTCTCTGCAACCTGGATTCCGTTTCCATCCCACTGACGAAGAGCTAGTCAGTTACTACTTGAAGAGAAAAGTTCGTGGACAACGTTTTAGTTTCAATGCAATTTCCGAGATTGATCTATATAAGCTTGAGCCTTGGGATTTACCAGGCAAATCTTGCCTAAAGAGCAGAGACTTGGAATGGTATTTTTTCAATCCCAAGGATAGAAAATATCCCAATGGTTCACGGACAAATCGATCAACAAAAGATGGTTACTGGAAAACGACAGGAAAAGACCGAGCTATTTCTTCAGCTTCAAAAACAGTGGGGATGAAAAAGACACTAGTATACCACAGAGGACGAGCTCCCCGTGGGGAAAGGACCAACTGGGTGATGCACGAATTCAGACTTGAAGGGAAGGATTTAAAAATGTCCAACATAGCTCAGGACTCCTATGTACTATGTCGGGTATTCCAGAAGAGTGGTCCTGGTCCC

Fln Alignment:

Contig2868___MDQVSLQPGFRFHPTDEELVSYYLKRKVRGQRFSFNAISEIDLYKLEPWDLPGKSCLKSRDLEWYFFNPKDRKYPNGSRTNRSTKDGYWKTTGKDRAISSASKTVGMKKTLVYHRGRAPRGERTNWVMHEFRLEGKDLKMSNIAQDSYVLCRVFQKSGPGP
B8LQV4_________________MDQVSLQPGFRFHPTDEELVSYYLKRKVRGQRFDFNAISEIDLYKFEPRDLPGKSCLQSRDLEWYFFNPKDRKYPNGSRTNRSTKDGYWKTTGKDRPVCSASQTVGMKKTLVYHTGRAPRGERTNWVMHEYRLEGKDLKMSNPAQDSYVLCRVFQKSGPGP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
232	14			85	0.993533
233		14		85	0.993533
234	14		85		0.993533
370		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain