SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2867

Length: 260 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2867
ACGATCAAAAACCTTGCAGAGCTTGTCAAGGAAGTTGTGGGATTTGAAGGGGAGCTCAAGTGGGACCCTACCAAACCAGATGGAACCCCTCGAAAACTAATGGACAGCTCAAAGTTAGCAAACATGGGATGGACGCCTAAGATCCCTCTAAAGGATGGCCTTGTAGGTACATACAAGTGGTATGTAGAGAATTATTTTCAGTGACCTTTGTTGCTGCCTCAATCACAGCATGAGCTATTCTTATTGCCATCATTGTGGCA

Ace file of the UniGene biog3_v1.0_unigene2867 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19301	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Fucose synthetase, putative n=1 Tax=Ricinus communis RepID=B9SCY0_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	gdp-l-fucose synthase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	GDP-L-fucose synthase.	EC:1.1.1.271	-	0.0	89%

Source	KEGGs	Term	Type	Identity
Blast2go	Fructose and mannose metabolism	00051		89%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		89%
Blast2go	Metabolic pathways	01100		89%
Blast2go	Oxalate oxidase.	EC:1.2.3.4	-	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	L-ascorbic acid biosynthetic process	GO:0019853	Biological Process	89%
Blast2go	GDP-L-fucose biosynthetic process	GO:0042350	Biological Process	89%
Blast2go	GDP-L-fucose synthase activity	GO:0050577	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	oxalate oxidase activity	GO:0050162	Molecular Function	89%
Blast2go	extracellular matrix	GO:0031012	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW91

Fln msg: your sequence is shorter than subject: 68 - 324

Fln protein: TIKNLAELVKEVVGFEGELKWDPTKPDGTPRKLMDSSKLANMGWTPKIPLKDGLVGTYKWYVENYFQ*

Protein Length: 69

Fln nts: ACGATCAAAAACCTTGCAGAGCTTGTCAAGGAAGTTGTGGGATTTGAAGGGGAGCTCAAGTGGGACCCTACCAAACCAGATGGAACCCCTCGAAAACTAATGGACAGCTCAAAGTTAGCAAACATGGGATGGACGCCTAAGATCCCTCTAAAGGATGGCCTTGTAGGTACATACAAGTGGTATGTAGAGAATTATTTTCAGTGA___CCTTTGTTGCTGCCTCAATCACAGCATGAGCTATTCTTATTGCCATCATTGTGGCA

Fln Alignment:

Contig2867___TIKNLAELVKEVVGFEGELKWDPTKPDGTPRKLMDSSKLANMGWTPKIPLKDGLVGTYKWYVENYFQ
A9NW91_________________TIKNLAELVKEVVGFEGELKWDPTKPDGTPRKLMDSSRLANMGWKPKISLRDGLIGTYKWYVENYLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain