SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2831

Length: 1021 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene2831

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3187	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV05_VITVI	-	-	56%
FL-Next	Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1	-	-	29%
Blast2go	histone-lysine n-methyltransferase	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	63%
Blast2go	Tetracycline biosynthesis	00253	63%
Blast2go	Histidine metabolism	00340	63%
Blast2go	Tyrosine metabolism	00350	63%
Blast2go	Phenylalanine metabolism	00360	63%
Blast2go	Tryptophan metabolism	00380	63%
Blast2go	Benzoxazinoid biosynthesis	00402	63%
Blast2go	Selenocompound metabolism	00450	63%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	63%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	63%
Blast2go	Methane metabolism	00680	63%
Blast2go	Porphyrin and chlorophyll metabolism	00860	63%
Blast2go	Carotenoid biosynthesis	00906	63%
Blast2go	Phenylpropanoid biosynthesis	00940	63%
Blast2go	Flavonoid biosynthesis	00941	63%
Blast2go	Anthocyanin biosynthesis	00942	63%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	63%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	63%
Blast2go	Insect hormone biosynthesis	00981	63%
Blast2go	Biosynthesis of type II polyketide products	01057	63%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	63%
Blast2go	Metabolic pathways	01100	63%
Blast2go	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	63%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	63%
Blast2go	methylation	GO:0032259	Biological Process	63%
Blast2go	binding	GO:0005488	Molecular Function	63%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	PWWP	IPR000313	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Protein kinase C-like, phorbol ester/diacylglycerol binding	IPR002219	-	-
Sma3	GYF	IPR003169	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Histone-lysine N-methyltransferase	IPR015722	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9C5X4-2

Fln msg: Distance to subject end: 116 aas, atg_distance in limit (1-15): atg_distance = 11, No stop codon before M and low homology subject, your sequence is shorter than subject: 336 - 479

Fln protein: MTNDNNLKVLLGEMARLSSKSDTIDEVSTSNITSFGKEECNKMCFRSSLEDDTERDSGQVGKVKKYLNSEFKVNNTITAAVHDPTVPQWVHMVCGLWMPGTRCLNVSTMGIFDVSGAVLPRRKLVCSICNRPGGLCIQCRVAKCSAPFHPWCAHQKGLLQSEIEGDDGDRVGFYGRCMHHGKYENTYSEIAQSGNTLPANLRLGTEKGTCARTEGYKGRKSWEEYRAELRRKSETNSTKVVSQEQINVWLHINERKSCTRGLIKPPNVDNKTDYRREYLRFKQEQGWKRLVVYKSGIHALGLYTAEFISKGEMVVEYVGEIVGLRVADKRELIITH

Protein Length: 337

Fln nts: GCAAGAATGGCAA_-_ATGACAAATGACAATAATTTGAAGGTTTTGCTAGGTGAGATGGCTCGTCTTTCTAGTAAGAGTGACACAATTGATGAAGTCAGCACATCTAATATCACATCATTTGGAAAAGAGGAGTGCAACAAAATGTGCTTTAGAAGCAGTCTTGAAGATGACACAGAAAGAGACTCTGGTCAAGTAGGGAAGGTTAAAAAATATTTGAATAGTGAATTCAAGGTAAATAATACTATTACTGCTGCCGTGCATGACCCAACTGTACCTCAATGGGTACACATGGTTTGTGGGCTGTGGATGCCTGGAACGAGGTGCTTAAATGTTAGTACTATGGGTATATTTGATGTCTCTGGAGCTGTTCTTCCCAGAAGGAAACTGGTTTGCTCTATATGCAATCGGCCTGGTGGTTTGTGTATCCAGTGTAGAGTTGCGAAATGCTCCGCCCCTTTTCATCCCTGGTGTGCACATCAAAAGGGTTTGTTGCAAAGTGAGATTGAGGGTGATGATGGCGACAGAGTAGGATTTTATGGTCGATGTATGCATCATGGGAAATATGAAAACACCTATTCTGAGATAGCTCAATCTGGCAATACCTTGCCTGCGAACCTTCGGTTGGGAACTGAGAAAGGAACTTGTGCTCGCACAGAGGGTTACAAGGGTCGTAAAAGCTGGGAAGAATACAGAGCTGAACTTCGAAGGAAATCTGAGACAAACAGCACGAAGGTTGTATCACAGGAACAAATAAATGTATGGCTTCACATTAATGAGCGGAAATCATGCACAAGGGGTCTTATCAAGCCTCCAAATGTAGACAACAAAACTGATTACAGAAGGGAGTACCTTCGCTTCAAACAAGAGCAAGGCTGGAAACGTTTGGTGGTATACAAATCAGGCATCCATGCCCTTGGGTTATATACTGCCGAGTTCATTTCAAAGGGTGAAATGGTGGTAGAGTATGTTGGTGAGATAGTGGGACTCCGTGTGGCAGACAAACGGGAGTTAATTATCACTCAC

Fln Alignment:

Contig2831___ITAAVHDPTVPQWVHMVCGLWMPGTRCLNVSTMGIFD-VSGAVLPRRKLVCSICNRPGGLCIQCRVAKCSAPFHPWCAHQKGLL-----QSEIEGDDGDR-VGFYGRCMHH--------GKYENTYSEIAQSGNTLPANLRLGTEKGTCARTEGYK--GRKSWEEYRAELRRKSETNSTKVVSQEQINVW-----LHINERKSCTRGLIKPPNVDNKTDYRREYLRFKQEQGWKRLVVYKSGIHALGLYTAEFISKGEMVVEYVGEIVGLRVADKRELII
Q9C5X4-2_______________VGGAMKPTTDGRWAHLACAIWIPETCLSDVKKMEPIDGVNKVSKDRWKLMCTICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENDMSVEGEEADQCIRMLSFCKRHRQTSTACLGSEDRIKSATHKTSEYLPPPNPSG-----CARTEPYNCFGRRG----RKEPEALAAASSKRLFVENQPYVIGGYSRLEFSTYKSIHGSKVSQMNTPSNILSMAEKYRYMRETYRKRLAFGKSGIHGFGIFAKLPHRAGDMMIEYTGELVRPSIADKREQLI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
689	80		20		0.995493
690		80		20	0.995493
828		75	25		0.996473
829	75			25	0.996473
840	16	83			0.994512
842			83	16	0.994512
843	83		16		0.994512
844	83			16	0.994512
915	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain