SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2803

Length: 416 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2803
GTGTGTACTATGTGGGTCCTCAAGGTTGGAAGAAGTTGAATGGTGATGATGTTGGTGAACTTCATTTCAAATACTATCCAGTCACAGAAAATATTGTAGAGCAGGAGATGGTTGAAGTCAGTGCTTGAAAGCCTCAATTGATGCACCATGTATCTTGAGGTTGCTGGCTTTACAAGCTGATGGTCATTTTGTATGCAAGTTTTCCTTTTCTAGTGCTATTATCCATTTGGCAAAGGGGATATCTTGATTATTAACTTCCTCCATTCTTATTTGAGGGAGGTTTCTGGTTGAAACAATCAATATTTGCAATCACAAATTTTTTAATTACTAGTTAAGCCAAGTAAAGATGCTTAAACATGCATCAATTCATTGTGTTTAGCAATACCATTGTATTAGCAACGGATTAATGCAGTTAC

Ace file of the UniGene biog3_v1.0_unigene2803 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18349	1/6
SustainPine v2.0	sp_v2.0_unigene61634	5/6

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NYS4_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	proteasome subunit beta type-5-a	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	88%
Blast2go	proteasome complex	GO:0000502	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYS4

Fln msg: your sequence is shorter than subject: 42 - 271

Fln protein: VYYVGPQGWKKLNGDDVGELHFKYYPVTENIVEQEMVEVSA*

Protein Length: 43

Fln nts: GTGTGTACTATGTGGGTCCTCAAGGTTGGAAGAAGTTGAATGGTGATGATGTTGGTGAACTTCATTTCAAATACTATCCAGTCACAGAAAATATTGTAGAGCAGGAGATGGTTGAAGTCAGTGCTTGA___AAGCCTCAATTGATGCACCATGTATCTTGAGGTTGCTGGCTTTACAAGCTGATGGTCATTTTGTATGCAAGTTTTCCTTTTCTAGTGCTATTATCCATTTGGCAAAGGGGATATCTTGATTATTAACTTCCTCCATTCTTATTTGAGGGAGGTTTCTGGTTGAAACAATCAATATTTGCAATCACAAATTTTTTAATTACTAGTTAAGCCAAGTAAAGATGCTTAAACATGCATCAATTCATTGTGTTTAGCAATACCATTGTATTAGCAACGGATTAATGCAGTTAC

Fln Alignment:

Contig2803___VYYVGPQGWKKLNGDDVGELHFKYYPVTENIVEQEMVEVSA
A9NYS4_________________VYYVGPQGWKKLSGDDVGELHFKYYPVTENVVEQEMVEVSA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
106	33		66		0.997452
108	33			66	0.997452
111		66		33	0.997452
139	25			75	0.996473
140	25	75			0.996473
141		75		25	0.996473
142		75	25		0.996473
212			85	14	0.993533
213			85	14	0.993533
315	20		80		0.995493
317	20			80	0.995493
318		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain