SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2790

Length: 330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene2790
GGTATATTGTCAGAGATGGCAAACCACAACAGTTACCTTCGAATCCCATGGCATTCATTGGAAGCAAGTTTCTCTCTGCACAAGCCAAGTTGAGCATTTTTATGGAGCCTCTTTTGTGGAAGCCTAGGAACTCGAAAGAGAAGACACCTAACTCTCTTGATATACACCAAGAAGAAAGTGTTGGAGACTTTTTGAGGCGTCACTTTGGTCAAGAGGTTGTGGACTACATAGCTGATCCCTTTGTTGCAGGGACTGCTGGTGCAGATGCTGAGTCCTTGTCTATACGACATATGTTTCCAGAAATATGGGACTTGGAAGAAAGGTTACATT

Ace file of the UniGene biog3_v1.0_unigene2790 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8707	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protoporphyrinogen oxidase [Arabidopsis thaliana] gb\|AAL77672.1\| AT5g14220/MUA22_22 [Arabidopsis thaliana] gb\|AAM26644.1\| AT5g14220/MUA22_22 [Arabidopsis thaliana] gb\|AED92001.1\| protoporphyrinogen oxidase [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protoporphyrinogen oxidase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protoporphyrinogen oxidase.	EC:1.3.3.4	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	heme biosynthetic process	GO:0006783	Biological Process	74%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	74%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	74%
Blast2go	oxygen-dependent protoporphyrinogen oxidase activity	GO:0004729	Molecular Function	74%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	74%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000759	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Protoporphyrinogen oxidase	IPR004572	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQQ3

Fln msg: Distance to subject end: 285 aas, your sequence is shorter than subject: 109 - 494

Fln protein: YIVRDGKPQQLPSNPMAFIGSKFLSAQAKLSIFMEPLLWKPRNSKEKTPNSLDIHQEESVGDFLRRHFGQEVVDYIADPFVAGTAGADAESLSIRHMFPEIWDLEERLH

Protein Length: 110

Fln nts: GGTATATTGTCAGAGATGGCAAACCACAACAGTTACCTTCGAATCCCATGGCATTCATTGGAAGCAAGTTTCTCTCTGCACAAGCCAAGTTGAGCATTTTTATGGAGCCTCTTTTGTGGAAGCCTAGGAACTCGAAAGAGAAGACACCTAACTCTCTTGATATACACCAAGAAGAAAGTGTTGGAGACTTTTTGAGGCGTCACTTTGGTCAAGAGGTTGTGGACTACATAGCTGATCCCTTTGTTGCAGGGACTGCTGGTGCAGATGCTGAGTCCTTGTCTATACGACATATGTTTCCAGAAATATGGGACTTGGAAGAAAGGTTACATT

Fln Alignment:

Contig2790___YIVRDGKPQQLPSNPMAFIGSKFLSAQAKLSIFMEPLLWKPRNSKEKTPNSLDIHQEESVGDFLRRHFGQEVVDYIADPFVAGTAGADAESLSIRHMFPEIWDLEER
B8LQQ3_________________YIVRDGKPQLLPSNPVAFIGSKTLSAQAKLNIFLEPILWKHKNSKEKTPNSPDIYQEESVGDFFRRHFGQEVVDYIVDPFVAGTAGADAESLSIRHMFPEIWDLEER

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
24	33	66			0.997452
27	66		33		0.997452
47	25			75	0.996473
50	75		25		0.996473
51			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain