SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene2753

Length: 424 nt

UniGene Fasta

>biog3_v1.0_unigene2753
AATGTAAGACTTCCAGGGACACTATGCAAGGCTTCAATGCATTGCTGGCTGGCTCCAATGAAGTCAGTGAAGGGCCTACTTTGGCCGTGCAAGTTCTCACAACAGGTTCATGGCCAACACAGCCAGGTGCATGTTGCAACCTGCCCACAGAAATCTGGGCTGTGTGTGAAAGGTTTAGGGGATACTATCTCAACACACACACTGGTCGGAGATTGACATGGCAGACTAACATGGGAACTGCAGACGTAAAAGCAACCTTTGGTAAATCTAGGAAACATGAACTTAATGTTTCCACTTATCAGATGTGTATTCTAATGCTGTTTAATTCAGCAGATTGTCTGAGCTATAAAGAAATTGAACAGACAACAGATATCCTAGCTGCAGACCTGAAAAGGTGCTTGCAATCTCTTGCCTGTGTAAAGGG

Ace file of the UniGene biog3_v1.0_unigene2753

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15050	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	cullin 3 [Arabidopsis thaliana] sp\|Q9ZVH4.1\|CUL3A_ARATH RecName: Full=Cullin-3A; Short=AtCUL3a gb\|AAF87034.1\|AC006535_12 T24P13.25 [Arabidopsis thaliana] gb\|AAD14503.1\| Highly similar to cullin 3 [Arabidopsis thaliana] emb\|CAC87120.1\| cullin 3a [Arabidops	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	endosperm development	GO:0009960	Biological Process	90%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	90%
Blast2go	response to red or far red light	GO:0009639	Biological Process	90%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	90%
Blast2go	protein binding	GO:0005515	Molecular Function	90%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 140 - 735

Fln protein: CKTSRDTMQGFNALLAGSNEVSEGPTLAVQVLTTGSWPTQPGACCNLPTEIWAVCERFRGYYLNTHTGRRLTWQTNMGTADVKATFGKSRKHELNVSTYQMCILMLFNSADCLSYKEIEQTTDILAADLKRCLQSLACVK

Protein Length: 141

Fln nts: AATGTAAGACTTCCAGGGACACTATGCAAGGCTTCAATGCATTGCTGGCTGGCTCCAATGAAGTCAGTGAAGGGCCTACTTTGGCCGTGCAAGTTCTCACAACAGGTTCATGGCCAACACAGCCAGGTGCATGTTGCAACCTGCCCACAGAAATCTGGGCTGTGTGTGAAAGGTTTAGGGGATACTATCTCAACACACACACTGGTCGGAGATTGACATGGCAGACTAACATGGGAACTGCAGACGTAAAAGCAACCTTTGGTAAATCTAGGAAACATGAACTTAATGTTTCCACTTATCAGATGTGTATTCTAATGCTGTTTAATTCAGCAGATTGTCTGAGCTATAAAGAAATTGAACAGACAACAGATATCCTAGCTGCAGACCTGAAAAGGTGCTTGCAATCTCTTGCCTGTGTAAAGGG

Fln Alignment:

Contig2753___KTSRDTMQGFNALLAGSNEVSEGPTLAVQVLTTGSWPTQPGACCNLPTEIWAVCERFRGYYLNTHTGRRLTWQTNMGTADVKATFGKSRKHELNVSTYQMCILMLFNSADCLSYKEIEQTTDILAADLKRCLQSLACVK
B8LNS8_________________KTSRDTMQGFTSMLAASSEGNEGPTLAVQVLTTGSWPTQTGARCNLPKEILAVCDKFKAYYLSTHTGRRLTWQTNMGTADLKATFGKGQKHELNVSTYQMCILILFNSADRLSYRDIEEATDIPAPDLKRCLQSLACVK

SNPs (tot: 3)

Position	A %	G %	T %	Probability
259	16		83	0.994512
260	16		83	0.994512
261		80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain